Experiment: rhizosphere sample 1; outgrowth in LB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BWI76_RS01585 and BWI76_RS01590 are separated by 12 nucleotides BWI76_RS01590 and BWI76_RS01595 are separated by 12 nucleotides BWI76_RS01595 and BWI76_RS01600 are separated by 251 nucleotides
BWI76_RS01585: BWI76_RS01585 - transcriptional regulator, at 322,144 to 322,416
_RS01585
BWI76_RS01590: BWI76_RS01590 - hypothetical protein, at 322,429 to 323,121
_RS01590
BWI76_RS01595: BWI76_RS01595 - zinc resistance protein, at 323,134 to 323,556
_RS01595
BWI76_RS01600: BWI76_RS01600 - sensor protein ZraS, at 323,808 to 325,196
_RS01600
Position (kb) 323
324 Strain fitness (log2 ratio) -2
-1
0
1
2
3
4
5
6 at 322.181 kb on + strand, within BWI76_RS01585 at 322.181 kb on + strand at 322.189 kb on - strand, within BWI76_RS01585 at 322.220 kb on + strand, within BWI76_RS01585 at 322.289 kb on + strand, within BWI76_RS01585 at 322.305 kb on - strand, within BWI76_RS01585 at 322.310 kb on - strand, within BWI76_RS01585 at 322.329 kb on + strand, within BWI76_RS01585 at 322.419 kb on + strand at 322.419 kb on - strand at 322.608 kb on - strand, within BWI76_RS01590 at 322.640 kb on - strand, within BWI76_RS01590 at 322.756 kb on - strand, within BWI76_RS01590 at 322.772 kb on + strand, within BWI76_RS01590 at 322.772 kb on + strand, within BWI76_RS01590 at 322.780 kb on - strand, within BWI76_RS01590 at 322.952 kb on + strand, within BWI76_RS01590 at 322.973 kb on - strand, within BWI76_RS01590 at 323.025 kb on - strand, within BWI76_RS01590 at 323.054 kb on + strand at 323.085 kb on + strand at 323.085 kb on - strand at 323.173 kb on + strand at 323.173 kb on + strand at 323.181 kb on - strand, within BWI76_RS01595 at 323.428 kb on - strand, within BWI76_RS01595 at 323.432 kb on + strand, within BWI76_RS01595 at 323.461 kb on - strand, within BWI76_RS01595 at 323.606 kb on - strand at 323.783 kb on - strand at 323.785 kb on - strand at 323.785 kb on - strand at 323.785 kb on - strand at 323.869 kb on + strand at 323.877 kb on - strand at 323.902 kb on + strand at 324.314 kb on + strand, within BWI76_RS01600 at 324.447 kb on + strand, within BWI76_RS01600 at 324.455 kb on - strand, within BWI76_RS01600 at 324.460 kb on - strand, within BWI76_RS01600
Per-strain Table
Position Strand Gene LocusTag Fraction rhizosphere sample 1; outgrowth in LB remove 322,181 + BWI76_RS01585 0.14 +4.6 322,181 + +4.1 322,189 - BWI76_RS01585 0.16 +5.5 322,220 + BWI76_RS01585 0.28 +6.3 322,289 + BWI76_RS01585 0.53 +4.6 322,305 - BWI76_RS01585 0.59 +4.5 322,310 - BWI76_RS01585 0.61 +6.7 322,329 + BWI76_RS01585 0.68 +6.1 322,419 + +3.9 322,419 - +3.2 322,608 - BWI76_RS01590 0.26 +0.2 322,640 - BWI76_RS01590 0.30 +2.0 322,756 - BWI76_RS01590 0.47 -0.5 322,772 + BWI76_RS01590 0.49 -0.8 322,772 + BWI76_RS01590 0.49 -0.5 322,780 - BWI76_RS01590 0.51 -0.5 322,952 + BWI76_RS01590 0.75 -0.4 322,973 - BWI76_RS01590 0.78 -0.6 323,025 - BWI76_RS01590 0.86 +0.3 323,054 + +0.2 323,085 + -0.3 323,085 - +0.3 323,173 + +1.0 323,173 + -1.2 323,181 - BWI76_RS01595 0.11 +1.4 323,428 - BWI76_RS01595 0.70 +0.1 323,432 + BWI76_RS01595 0.70 +1.2 323,461 - BWI76_RS01595 0.77 +0.3 323,606 - +1.0 323,783 - +0.5 323,785 - +0.7 323,785 - -0.3 323,785 - +1.1 323,869 + +1.7 323,877 - -2.0 323,902 + -0.6 324,314 + BWI76_RS01600 0.36 -0.1 324,447 + BWI76_RS01600 0.46 -1.2 324,455 - BWI76_RS01600 0.47 +1.2 324,460 - BWI76_RS01600 0.47 -1.0
Or see this region's nucleotide sequence