Experiment: Plant=Brachypodium_distachyon; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=liquid_soil_extract; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=21_days
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABIE53_004780 and ABIE53_004781 are separated by 20 nucleotides ABIE53_004781 and ABIE53_004782 are separated by 34 nucleotides
ABIE53_004780: ABIE53_004780 - erythritol transport system ATP-binding protein, at 984,147 to 985,685
_004780
ABIE53_004781: ABIE53_004781 - erythritol transport system permease protein, at 985,706 to 986,788
_004781
ABIE53_004782: ABIE53_004782 - glycerol kinase, at 986,823 to 988,292
_004782
Position (kb) 985
986
987 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3
4
5
6 at 984.753 kb on + strand, within ABIE53_004780 at 984.754 kb on - strand, within ABIE53_004780 at 984.978 kb on + strand, within ABIE53_004780 at 984.978 kb on + strand, within ABIE53_004780 at 984.978 kb on + strand, within ABIE53_004780 at 984.979 kb on - strand, within ABIE53_004780 at 985.109 kb on - strand, within ABIE53_004780 at 985.109 kb on - strand, within ABIE53_004780 at 985.319 kb on + strand, within ABIE53_004780 at 985.472 kb on - strand, within ABIE53_004780 at 985.472 kb on - strand, within ABIE53_004780 at 985.472 kb on - strand, within ABIE53_004780 at 985.492 kb on - strand, within ABIE53_004780 at 985.492 kb on - strand, within ABIE53_004780 at 985.536 kb on + strand at 985.844 kb on - strand, within ABIE53_004781 at 986.019 kb on - strand, within ABIE53_004781 at 986.019 kb on - strand, within ABIE53_004781 at 986.129 kb on + strand, within ABIE53_004781 at 986.183 kb on + strand, within ABIE53_004781 at 986.183 kb on + strand, within ABIE53_004781 at 986.183 kb on + strand, within ABIE53_004781 at 986.183 kb on + strand, within ABIE53_004781 at 986.183 kb on + strand, within ABIE53_004781 at 986.183 kb on + strand, within ABIE53_004781 at 986.183 kb on + strand, within ABIE53_004781 at 986.183 kb on + strand, within ABIE53_004781 at 986.183 kb on + strand, within ABIE53_004781 at 986.184 kb on - strand, within ABIE53_004781 at 986.184 kb on - strand, within ABIE53_004781 at 986.184 kb on - strand, within ABIE53_004781 at 986.184 kb on - strand, within ABIE53_004781 at 986.388 kb on - strand, within ABIE53_004781 at 986.388 kb on - strand, within ABIE53_004781 at 986.388 kb on - strand, within ABIE53_004781 at 986.459 kb on + strand, within ABIE53_004781 at 986.459 kb on + strand, within ABIE53_004781 at 986.677 kb on + strand, within ABIE53_004781 at 986.829 kb on + strand at 986.829 kb on + strand at 986.829 kb on + strand at 986.829 kb on + strand at 986.829 kb on + strand at 986.830 kb on - strand at 986.830 kb on - strand at 986.830 kb on - strand at 986.830 kb on - strand at 986.862 kb on - strand at 986.920 kb on + strand at 986.984 kb on - strand, within ABIE53_004782 at 987.037 kb on + strand, within ABIE53_004782 at 987.146 kb on - strand, within ABIE53_004782 at 987.202 kb on + strand, within ABIE53_004782 at 987.217 kb on - strand, within ABIE53_004782 at 987.275 kb on + strand, within ABIE53_004782 at 987.275 kb on + strand, within ABIE53_004782 at 987.275 kb on + strand, within ABIE53_004782 at 987.360 kb on + strand, within ABIE53_004782
Per-strain Table
Position Strand Gene LocusTag Fraction Plant=Brachypodium_distachyon; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=liquid_soil_extract; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=21_days remove 984,753 + ABIE53_004780 0.39 -1.0 984,754 - ABIE53_004780 0.39 -0.1 984,978 + ABIE53_004780 0.54 -2.9 984,978 + ABIE53_004780 0.54 +2.1 984,978 + ABIE53_004780 0.54 -0.2 984,979 - ABIE53_004780 0.54 +2.5 985,109 - ABIE53_004780 0.63 +2.5 985,109 - ABIE53_004780 0.63 -2.2 985,319 + ABIE53_004780 0.76 +0.3 985,472 - ABIE53_004780 0.86 +4.8 985,472 - ABIE53_004780 0.86 -0.5 985,472 - ABIE53_004780 0.86 -0.5 985,492 - ABIE53_004780 0.87 -0.1 985,492 - ABIE53_004780 0.87 -0.1 985,536 + -2.6 985,844 - ABIE53_004781 0.13 -1.3 986,019 - ABIE53_004781 0.29 +0.5 986,019 - ABIE53_004781 0.29 -0.1 986,129 + ABIE53_004781 0.39 -1.7 986,183 + ABIE53_004781 0.44 -1.7 986,183 + ABIE53_004781 0.44 +6.0 986,183 + ABIE53_004781 0.44 +0.9 986,183 + ABIE53_004781 0.44 +0.3 986,183 + ABIE53_004781 0.44 +2.2 986,183 + ABIE53_004781 0.44 +0.2 986,183 + ABIE53_004781 0.44 +0.6 986,183 + ABIE53_004781 0.44 +0.5 986,183 + ABIE53_004781 0.44 -1.7 986,184 - ABIE53_004781 0.44 -1.5 986,184 - ABIE53_004781 0.44 -1.5 986,184 - ABIE53_004781 0.44 +1.5 986,184 - ABIE53_004781 0.44 -0.1 986,388 - ABIE53_004781 0.63 -0.2 986,388 - ABIE53_004781 0.63 -0.8 986,388 - ABIE53_004781 0.63 +4.2 986,459 + ABIE53_004781 0.70 +1.5 986,459 + ABIE53_004781 0.70 -0.5 986,677 + ABIE53_004781 0.90 -0.1 986,829 + -1.6 986,829 + -0.5 986,829 + -0.5 986,829 + -1.5 986,829 + -0.2 986,830 - +2.2 986,830 - +0.8 986,830 - -0.1 986,830 - +0.3 986,862 - -0.8 986,920 + +0.5 986,984 - ABIE53_004782 0.11 -0.8 987,037 + ABIE53_004782 0.15 -0.0 987,146 - ABIE53_004782 0.22 -1.1 987,202 + ABIE53_004782 0.26 +0.5 987,217 - ABIE53_004782 0.27 +0.9 987,275 + ABIE53_004782 0.31 +0.5 987,275 + ABIE53_004782 0.31 +0.2 987,275 + ABIE53_004782 0.31 +0.6 987,360 + ABIE53_004782 0.37 +0.5
Or see this region's nucleotide sequence