Strain Fitness in Paraburkholderia graminis OAS925 around ABIE53_003900

Experiment: Plant=Brachypodium_distachyon; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=liquid_soil_extract; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=21_days

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntABIE53_003899 and ABIE53_003900 are separated by 54 nucleotidesABIE53_003900 and ABIE53_003901 are separated by 113 nucleotides ABIE53_003899: ABIE53_003899 - nucleoside-diphosphate-sugar epimerase, at 36,225 to 37,124 _003899 ABIE53_003900: ABIE53_003900 - methyl-accepting chemotaxis protein-1 (serine sensor receptor), at 37,179 to 38,924 _003900 ABIE53_003901: ABIE53_003901 - AAHS family 4-hydroxybenzoate transporter-like MFS transporter, at 39,038 to 40,408 _003901 Position (kb) 37 38 39Strain fitness (log2 ratio) -2 -1 0 1 2 3 4at 36.202 kb on - strandat 36.210 kb on + strandat 36.210 kb on + strandat 36.210 kb on + strandat 36.241 kb on + strandat 36.388 kb on + strand, within ABIE53_003899at 36.388 kb on + strand, within ABIE53_003899at 36.388 kb on + strand, within ABIE53_003899at 36.540 kb on + strand, within ABIE53_003899at 36.540 kb on + strand, within ABIE53_003899at 36.540 kb on + strand, within ABIE53_003899at 36.541 kb on - strand, within ABIE53_003899at 36.541 kb on - strand, within ABIE53_003899at 36.541 kb on - strand, within ABIE53_003899at 36.541 kb on - strand, within ABIE53_003899at 36.610 kb on - strand, within ABIE53_003899at 36.693 kb on + strand, within ABIE53_003899at 36.694 kb on - strand, within ABIE53_003899at 36.762 kb on + strand, within ABIE53_003899at 36.762 kb on + strand, within ABIE53_003899at 36.762 kb on + strand, within ABIE53_003899at 36.861 kb on + strand, within ABIE53_003899at 36.862 kb on - strand, within ABIE53_003899at 36.862 kb on - strand, within ABIE53_003899at 36.862 kb on - strand, within ABIE53_003899at 36.864 kb on - strand, within ABIE53_003899at 36.864 kb on - strand, within ABIE53_003899at 36.994 kb on - strand, within ABIE53_003899at 36.996 kb on + strand, within ABIE53_003899at 37.122 kb on + strandat 37.122 kb on + strandat 37.123 kb on - strandat 37.123 kb on - strandat 37.129 kb on + strandat 37.129 kb on + strandat 37.129 kb on + strandat 37.130 kb on - strandat 37.377 kb on + strand, within ABIE53_003900at 37.377 kb on + strand, within ABIE53_003900at 37.378 kb on - strand, within ABIE53_003900at 37.378 kb on - strand, within ABIE53_003900at 37.613 kb on + strand, within ABIE53_003900at 37.613 kb on + strand, within ABIE53_003900at 37.614 kb on - strand, within ABIE53_003900at 37.762 kb on + strand, within ABIE53_003900at 37.763 kb on - strand, within ABIE53_003900at 37.763 kb on - strand, within ABIE53_003900at 37.908 kb on - strand, within ABIE53_003900at 38.114 kb on + strand, within ABIE53_003900at 38.179 kb on + strand, within ABIE53_003900at 38.179 kb on + strand, within ABIE53_003900at 38.180 kb on - strand, within ABIE53_003900at 38.180 kb on - strand, within ABIE53_003900at 38.197 kb on + strand, within ABIE53_003900at 38.218 kb on + strand, within ABIE53_003900at 38.238 kb on - strand, within ABIE53_003900at 38.387 kb on + strand, within ABIE53_003900at 38.388 kb on - strand, within ABIE53_003900at 38.596 kb on + strand, within ABIE53_003900at 38.596 kb on + strand, within ABIE53_003900at 38.596 kb on + strand, within ABIE53_003900at 38.596 kb on + strand, within ABIE53_003900at 38.596 kb on + strand, within ABIE53_003900at 38.597 kb on - strand, within ABIE53_003900at 38.597 kb on - strand, within ABIE53_003900at 38.597 kb on - strand, within ABIE53_003900at 38.597 kb on - strand, within ABIE53_003900at 38.600 kb on + strand, within ABIE53_003900at 39.002 kb on + strandat 39.002 kb on + strandat 39.002 kb on + strandat 39.003 kb on - strandat 39.003 kb on - strandat 39.004 kb on + strandat 39.255 kb on + strand, within ABIE53_003901at 39.276 kb on + strand, within ABIE53_003901at 39.667 kb on + strand, within ABIE53_003901at 39.668 kb on - strand, within ABIE53_003901at 39.670 kb on - strand, within ABIE53_003901

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Per-strain Table

Position Strand Gene LocusTag Fraction Plant=Brachypodium_distachyon; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=liquid_soil_extract; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=21_days
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36,202 - +0.4
36,210 + +0.5
36,210 + -1.0
36,210 + -0.9
36,241 + +0.8
36,388 + ABIE53_003899 0.18 -0.1
36,388 + ABIE53_003899 0.18 +0.4
36,388 + ABIE53_003899 0.18 -1.4
36,540 + ABIE53_003899 0.35 +1.4
36,540 + ABIE53_003899 0.35 -1.4
36,540 + ABIE53_003899 0.35 -0.1
36,541 - ABIE53_003899 0.35 -1.1
36,541 - ABIE53_003899 0.35 -0.3
36,541 - ABIE53_003899 0.35 -1.7
36,541 - ABIE53_003899 0.35 -1.6
36,610 - ABIE53_003899 0.43 -1.1
36,693 + ABIE53_003899 0.52 -0.7
36,694 - ABIE53_003899 0.52 -1.1
36,762 + ABIE53_003899 0.60 -1.9
36,762 + ABIE53_003899 0.60 +1.1
36,762 + ABIE53_003899 0.60 +0.4
36,861 + ABIE53_003899 0.71 -0.6
36,862 - ABIE53_003899 0.71 -1.2
36,862 - ABIE53_003899 0.71 -0.1
36,862 - ABIE53_003899 0.71 -1.1
36,864 - ABIE53_003899 0.71 -1.4
36,864 - ABIE53_003899 0.71 -0.3
36,994 - ABIE53_003899 0.85 +1.4
36,996 + ABIE53_003899 0.86 -0.1
37,122 + -0.9
37,122 + +2.4
37,123 - -0.9
37,123 - -2.0
37,129 + +2.8
37,129 + +0.2
37,129 + +2.4
37,130 - -1.6
37,377 + ABIE53_003900 0.11 +0.4
37,377 + ABIE53_003900 0.11 +0.4
37,378 - ABIE53_003900 0.11 +0.3
37,378 - ABIE53_003900 0.11 +0.7
37,613 + ABIE53_003900 0.25 +0.9
37,613 + ABIE53_003900 0.25 +0.2
37,614 - ABIE53_003900 0.25 +0.0
37,762 + ABIE53_003900 0.33 -0.9
37,763 - ABIE53_003900 0.33 -0.1
37,763 - ABIE53_003900 0.33 +0.3
37,908 - ABIE53_003900 0.42 -1.1
38,114 + ABIE53_003900 0.54 -0.1
38,179 + ABIE53_003900 0.57 -0.2
38,179 + ABIE53_003900 0.57 +2.6
38,180 - ABIE53_003900 0.57 +0.9
38,180 - ABIE53_003900 0.57 -0.7
38,197 + ABIE53_003900 0.58 -1.1
38,218 + ABIE53_003900 0.60 -0.7
38,238 - ABIE53_003900 0.61 +0.9
38,387 + ABIE53_003900 0.69 +0.1
38,388 - ABIE53_003900 0.69 +0.9
38,596 + ABIE53_003900 0.81 +0.2
38,596 + ABIE53_003900 0.81 +0.1
38,596 + ABIE53_003900 0.81 -0.6
38,596 + ABIE53_003900 0.81 +0.2
38,596 + ABIE53_003900 0.81 -0.1
38,597 - ABIE53_003900 0.81 -0.6
38,597 - ABIE53_003900 0.81 +0.4
38,597 - ABIE53_003900 0.81 +3.8
38,597 - ABIE53_003900 0.81 +1.3
38,600 + ABIE53_003900 0.81 -0.6
39,002 + -0.8
39,002 + +1.8
39,002 + -1.0
39,003 - +0.8
39,003 - +0.7
39,004 + -0.6
39,255 + ABIE53_003901 0.16 +0.4
39,276 + ABIE53_003901 0.17 -1.4
39,667 + ABIE53_003901 0.46 -0.1
39,668 - ABIE53_003901 0.46 +0.3
39,670 - ABIE53_003901 0.46 +0.2

Or see this region's nucleotide sequence