Strain Fitness in Paraburkholderia graminis OAS925 around ABIE53_003715

Experiment: Plant=Brachypodium_distachyon; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=liquid_soil_extract; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=21_days

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntABIE53_003713 and ABIE53_003714 overlap by 4 nucleotidesABIE53_003714 and ABIE53_003715 are separated by 120 nucleotidesABIE53_003715 and ABIE53_003716 are separated by 69 nucleotides ABIE53_003713: ABIE53_003713 - thiamine-phosphate pyrophosphorylase, at 4,163,816 to 4,164,928 _003713 ABIE53_003714: ABIE53_003714 - thiazole synthase, at 4,164,925 to 4,165,749 _003714 ABIE53_003715: ABIE53_003715 - sulfur carrier protein, at 4,165,870 to 4,166,067 _003715 ABIE53_003716: ABIE53_003716 - glycine oxidase, at 4,166,137 to 4,167,267 _003716 Position (kb) 4165 4166 4167Strain fitness (log2 ratio) -1 0 1at 4166.079 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Plant=Brachypodium_distachyon; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=liquid_soil_extract; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=21_days
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4,166,079 - -0.8

Or see this region's nucleotide sequence