Strain Fitness in Paraburkholderia graminis OAS925 around ABIE53_002018

Experiment: Plant=Brachypodium_distachyon; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=liquid_soil_extract; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=21_days

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntABIE53_002016 and ABIE53_002017 are separated by 10 nucleotidesABIE53_002017 and ABIE53_002018 overlap by 38 nucleotidesABIE53_002018 and ABIE53_002019 overlap by 4 nucleotidesABIE53_002019 and ABIE53_002020 overlap by 4 nucleotides ABIE53_002016: ABIE53_002016 - undecaprenyl phosphate-alpha-L-ara4FN deformylase, at 2,261,653 to 2,262,546 _002016 ABIE53_002017: ABIE53_002017 - nucleoside-diphosphate-sugar epimerase, at 2,262,557 to 2,263,504 _002017 ABIE53_002018: ABIE53_002018 - nucleoside-diphosphate-sugar epimerase, at 2,263,467 to 2,263,604 _002018 ABIE53_002019: ABIE53_002019 - methionyl-tRNA formyltransferase, at 2,263,601 to 2,264,536 _002019 ABIE53_002020: ABIE53_002020 - undecaprenyl-phosphate 4-deoxy-4-formamido-L-arabinose transferase, at 2,264,533 to 2,265,603 _002020 Position (kb) 2263 2264Strain fitness (log2 ratio) -1 0 1at 2262.559 kb on - strandat 2262.559 kb on - strandat 2262.559 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Plant=Brachypodium_distachyon; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=liquid_soil_extract; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=21_days
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2,262,559 - +0.0
2,262,559 - -0.5
2,262,559 - -0.4

Or see this region's nucleotide sequence