Strain Fitness in Paraburkholderia graminis OAS925 around ABIE53_000641

Experiment: Plant=Brachypodium_distachyon; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=liquid_soil_extract; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=21_days

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntABIE53_000640 and ABIE53_000641 are separated by 308 nucleotidesABIE53_000641 and ABIE53_000642 are separated by 145 nucleotides ABIE53_000640: ABIE53_000640 - DeoR family fructose operon transcriptional repressor, at 696,538 to 697,308 _000640 ABIE53_000641: ABIE53_000641 - glycerophosphoryl diester phosphodiesterase, at 697,617 to 698,381 _000641 ABIE53_000642: ABIE53_000642 - putative spermidine/putrescine transport system substrate-binding protein, at 698,527 to 699,639 _000642 Position (kb) 697 698 699Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3 4 5at 696.645 kb on - strand, within ABIE53_000640at 696.678 kb on - strand, within ABIE53_000640at 696.678 kb on - strand, within ABIE53_000640at 696.749 kb on + strand, within ABIE53_000640at 696.749 kb on + strand, within ABIE53_000640at 696.750 kb on - strand, within ABIE53_000640at 696.750 kb on - strand, within ABIE53_000640at 696.750 kb on - strand, within ABIE53_000640at 696.750 kb on - strand, within ABIE53_000640at 696.750 kb on - strand, within ABIE53_000640at 697.254 kb on + strandat 697.254 kb on + strandat 697.254 kb on + strandat 697.254 kb on + strandat 697.254 kb on + strandat 697.255 kb on - strandat 697.255 kb on - strandat 697.255 kb on - strandat 697.255 kb on - strandat 697.255 kb on - strandat 697.269 kb on + strandat 697.270 kb on + strandat 697.271 kb on - strandat 697.398 kb on + strandat 697.401 kb on + strandat 697.401 kb on + strandat 697.401 kb on + strandat 697.402 kb on - strandat 697.422 kb on + strandat 697.434 kb on - strandat 697.450 kb on + strandat 697.450 kb on + strandat 697.450 kb on + strandat 697.451 kb on - strandat 697.460 kb on + strandat 697.518 kb on + strandat 697.519 kb on - strandat 697.519 kb on - strandat 697.593 kb on - strandat 697.593 kb on - strandat 697.593 kb on - strandat 697.593 kb on - strandat 697.593 kb on - strandat 697.660 kb on - strandat 697.740 kb on + strand, within ABIE53_000641at 697.854 kb on + strand, within ABIE53_000641at 697.854 kb on + strand, within ABIE53_000641at 697.854 kb on + strand, within ABIE53_000641at 697.854 kb on + strand, within ABIE53_000641at 697.854 kb on + strand, within ABIE53_000641at 697.854 kb on + strand, within ABIE53_000641at 697.855 kb on - strand, within ABIE53_000641at 697.896 kb on + strand, within ABIE53_000641at 698.177 kb on + strand, within ABIE53_000641at 698.223 kb on + strand, within ABIE53_000641at 698.223 kb on + strand, within ABIE53_000641at 698.223 kb on + strand, within ABIE53_000641at 698.224 kb on - strand, within ABIE53_000641at 698.224 kb on - strand, within ABIE53_000641at 698.273 kb on - strand, within ABIE53_000641at 698.273 kb on - strand, within ABIE53_000641at 698.273 kb on - strand, within ABIE53_000641at 698.273 kb on - strand, within ABIE53_000641at 698.273 kb on - strand, within ABIE53_000641at 698.280 kb on + strand, within ABIE53_000641at 698.280 kb on + strand, within ABIE53_000641at 698.280 kb on + strand, within ABIE53_000641at 698.281 kb on - strand, within ABIE53_000641at 698.281 kb on - strand, within ABIE53_000641at 698.343 kb on - strandat 698.358 kb on - strandat 698.526 kb on + strandat 698.526 kb on + strandat 698.526 kb on + strandat 698.526 kb on + strandat 698.527 kb on - strandat 698.527 kb on - strandat 698.543 kb on + strandat 698.543 kb on + strandat 698.543 kb on + strandat 698.543 kb on + strandat 698.544 kb on - strandat 698.544 kb on - strandat 698.544 kb on - strandat 698.553 kb on - strandat 698.553 kb on - strandat 698.692 kb on + strand, within ABIE53_000642at 698.692 kb on + strand, within ABIE53_000642at 698.692 kb on + strand, within ABIE53_000642at 698.692 kb on + strand, within ABIE53_000642at 698.692 kb on + strand, within ABIE53_000642at 698.693 kb on - strand, within ABIE53_000642at 698.725 kb on + strand, within ABIE53_000642at 698.726 kb on - strand, within ABIE53_000642at 698.726 kb on - strand, within ABIE53_000642at 698.726 kb on - strand, within ABIE53_000642at 698.887 kb on + strand, within ABIE53_000642at 698.887 kb on + strand, within ABIE53_000642at 698.887 kb on + strand, within ABIE53_000642at 698.887 kb on + strand, within ABIE53_000642at 698.888 kb on - strand, within ABIE53_000642at 698.941 kb on + strand, within ABIE53_000642at 698.959 kb on + strand, within ABIE53_000642at 698.959 kb on + strand, within ABIE53_000642at 698.959 kb on + strand, within ABIE53_000642at 698.960 kb on - strand, within ABIE53_000642at 698.960 kb on - strand, within ABIE53_000642at 699.040 kb on + strand, within ABIE53_000642at 699.103 kb on + strand, within ABIE53_000642at 699.103 kb on + strand, within ABIE53_000642at 699.104 kb on - strand, within ABIE53_000642at 699.104 kb on - strand, within ABIE53_000642at 699.265 kb on + strand, within ABIE53_000642at 699.265 kb on + strand, within ABIE53_000642at 699.266 kb on - strand, within ABIE53_000642at 699.289 kb on - strand, within ABIE53_000642at 699.352 kb on + strand, within ABIE53_000642at 699.352 kb on + strand, within ABIE53_000642at 699.352 kb on + strand, within ABIE53_000642at 699.352 kb on + strand, within ABIE53_000642at 699.352 kb on + strand, within ABIE53_000642at 699.352 kb on + strand, within ABIE53_000642at 699.353 kb on - strand, within ABIE53_000642at 699.353 kb on - strand, within ABIE53_000642at 699.367 kb on - strand, within ABIE53_000642at 699.373 kb on + strand, within ABIE53_000642

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction Plant=Brachypodium_distachyon; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=liquid_soil_extract; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=21_days
remove
696,645 - ABIE53_000640 0.14 +0.6
696,678 - ABIE53_000640 0.18 +0.0
696,678 - ABIE53_000640 0.18 +0.8
696,749 + ABIE53_000640 0.27 -0.2
696,749 + ABIE53_000640 0.27 +3.1
696,750 - ABIE53_000640 0.27 +2.2
696,750 - ABIE53_000640 0.27 +3.7
696,750 - ABIE53_000640 0.27 +1.1
696,750 - ABIE53_000640 0.27 +2.6
696,750 - ABIE53_000640 0.27 +4.6
697,254 + +2.9
697,254 + +1.6
697,254 + +2.2
697,254 + +0.1
697,254 + +2.1
697,255 - +0.5
697,255 - +0.0
697,255 - +2.7
697,255 - +2.7
697,255 - +1.3
697,269 + +1.2
697,270 + +0.0
697,271 - +0.0
697,398 + +0.0
697,401 + +2.3
697,401 + +1.1
697,401 + +1.2
697,402 - +1.6
697,422 + -0.6
697,434 - +0.6
697,450 + +2.1
697,450 + +1.4
697,450 + -0.4
697,451 - -0.1
697,460 + +1.6
697,518 + -0.6
697,519 - -1.5
697,519 - -2.2
697,593 - +0.0
697,593 - +0.7
697,593 - -1.2
697,593 - -1.1
697,593 - -1.4
697,660 - +0.3
697,740 + ABIE53_000641 0.16 +0.6
697,854 + ABIE53_000641 0.31 +1.1
697,854 + ABIE53_000641 0.31 +0.0
697,854 + ABIE53_000641 0.31 +0.1
697,854 + ABIE53_000641 0.31 -0.1
697,854 + ABIE53_000641 0.31 -0.2
697,854 + ABIE53_000641 0.31 -0.4
697,855 - ABIE53_000641 0.31 -0.7
697,896 + ABIE53_000641 0.36 +0.4
698,177 + ABIE53_000641 0.73 +0.6
698,223 + ABIE53_000641 0.79 -0.7
698,223 + ABIE53_000641 0.79 +0.6
698,223 + ABIE53_000641 0.79 +0.6
698,224 - ABIE53_000641 0.79 -0.9
698,224 - ABIE53_000641 0.79 -0.4
698,273 - ABIE53_000641 0.86 -2.3
698,273 - ABIE53_000641 0.86 +0.6
698,273 - ABIE53_000641 0.86 +0.6
698,273 - ABIE53_000641 0.86 +0.0
698,273 - ABIE53_000641 0.86 +0.0
698,280 + ABIE53_000641 0.87 -0.4
698,280 + ABIE53_000641 0.87 -1.0
698,280 + ABIE53_000641 0.87 -2.4
698,281 - ABIE53_000641 0.87 +0.6
698,281 - ABIE53_000641 0.87 +0.3
698,343 - +2.6
698,358 - +0.9
698,526 + -0.4
698,526 + -1.3
698,526 + -0.7
698,526 + -1.0
698,527 - +0.0
698,527 - +0.0
698,543 + +0.7
698,543 + -0.5
698,543 + +1.2
698,543 + -0.4
698,544 - -0.7
698,544 - -0.9
698,544 - -1.7
698,553 - -1.5
698,553 - +1.0
698,692 + ABIE53_000642 0.15 -0.0
698,692 + ABIE53_000642 0.15 -0.5
698,692 + ABIE53_000642 0.15 +1.0
698,692 + ABIE53_000642 0.15 +5.3
698,692 + ABIE53_000642 0.15 -2.9
698,693 - ABIE53_000642 0.15 +2.0
698,725 + ABIE53_000642 0.18 +0.6
698,726 - ABIE53_000642 0.18 -1.2
698,726 - ABIE53_000642 0.18 +1.3
698,726 - ABIE53_000642 0.18 +2.2
698,887 + ABIE53_000642 0.32 -0.9
698,887 + ABIE53_000642 0.32 +0.5
698,887 + ABIE53_000642 0.32 +0.4
698,887 + ABIE53_000642 0.32 -0.8
698,888 - ABIE53_000642 0.32 +1.0
698,941 + ABIE53_000642 0.37 +2.2
698,959 + ABIE53_000642 0.39 +1.6
698,959 + ABIE53_000642 0.39 -0.4
698,959 + ABIE53_000642 0.39 +1.6
698,960 - ABIE53_000642 0.39 -2.1
698,960 - ABIE53_000642 0.39 +0.5
699,040 + ABIE53_000642 0.46 +0.0
699,103 + ABIE53_000642 0.52 -0.1
699,103 + ABIE53_000642 0.52 -0.7
699,104 - ABIE53_000642 0.52 -0.8
699,104 - ABIE53_000642 0.52 -1.2
699,265 + ABIE53_000642 0.66 +1.1
699,265 + ABIE53_000642 0.66 -2.5
699,266 - ABIE53_000642 0.66 -1.5
699,289 - ABIE53_000642 0.68 -2.4
699,352 + ABIE53_000642 0.74 -0.7
699,352 + ABIE53_000642 0.74 +1.1
699,352 + ABIE53_000642 0.74 -0.7
699,352 + ABIE53_000642 0.74 +0.0
699,352 + ABIE53_000642 0.74 +0.3
699,352 + ABIE53_000642 0.74 +0.0
699,353 - ABIE53_000642 0.74 +2.3
699,353 - ABIE53_000642 0.74 -1.6
699,367 - ABIE53_000642 0.75 -0.4
699,373 + ABIE53_000642 0.76 -0.4

Or see this region's nucleotide sequence