Strain Fitness in Shewanella oneidensis MR-1 around SO3239.3

Experiment: C.elegans, mixed culture-2

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	C.elegans, mixed culture-2
3,378,822	-	flgL	SO3239	0.87	-1.4
3,378,846	+	flgL	SO3239	0.89	+0.6
3,378,858	-	flgL	SO3239	0.90	-0.9
3,378,889	+				-0.5
3,378,970	+				-0.6
3,378,978	-				-1.4
3,379,178	+		SO_3240	0.62	+0.1
3,379,222	+		SO_3240	0.77	-1.3
3,379,230	-		SO_3240	0.80	-1.4
3,379,269	+				-1.1
3,379,455	+		SO3239.2	0.42	+0.5
3,379,476	-		SO3239.2	0.47	+0.1
3,379,565	+		SO3239.2	0.68	-2.5
3,379,619	+		SO3239.2	0.81	-0.8
3,379,619	+		SO3239.2	0.81	+0.1
3,379,639	-		SO3239.2	0.85	+2.1
3,379,641	-		SO3239.2	0.86	-1.0
3,379,747	-				+0.4
3,379,756	+				-1.6
3,379,968	+		SO3239.3	0.18	-0.5
3,379,982	+		SO3239.3	0.19	-2.5
3,379,990	-		SO3239.3	0.20	+0.0
3,380,021	-		SO3239.3	0.23	-1.8
3,380,034	-		SO3239.3	0.24	-3.2
3,380,063	+		SO3239.3	0.26	-0.7
3,380,067	+		SO3239.3	0.27	-1.2
3,380,134	-		SO3239.3	0.32	-1.6
3,380,134	-		SO3239.3	0.32	-1.7
3,380,249	-		SO3239.3	0.42	-0.4
3,380,281	+		SO3239.3	0.45	-1.5
3,380,282	-		SO3239.3	0.45	-1.8
3,380,312	+		SO3239.3	0.48	+0.8
3,380,390	+		SO3239.3	0.54	-0.6
3,380,421	-		SO3239.3	0.57	-1.9
3,380,460	+		SO3239.3	0.60	+0.7
3,380,501	+		SO3239.3	0.64	-0.9
3,380,519	-		SO3239.3	0.66	+0.2
3,380,519	-		SO3239.3	0.66	-1.9
3,380,519	-		SO3239.3	0.66	-1.1
3,380,519	-		SO3239.3	0.66	-1.1
3,380,584	+		SO3239.3	0.71	-0.9
3,380,640	-		SO3239.3	0.76	-1.2
3,380,645	+		SO3239.3	0.76	-0.4
3,380,667	+		SO3239.3	0.78	-0.7
3,380,699	-		SO3239.3	0.81	-1.4
3,380,774	-		SO3239.3	0.88	-0.7
3,380,779	-		SO3239.3	0.88	-0.7
3,380,824	+				-1.5
3,380,824	+				-1.9
3,380,832	-				-0.5
3,380,832	-				+1.5
3,380,858	-				-1.8
3,380,890	-				-1.1
3,380,890	-				-1.1
3,380,970	+				+0.2
3,381,022	-				+2.1
3,381,074	+				-2.8
3,381,076	+	flgJ	SO3241	0.10	-0.4
3,381,082	-	flgJ	SO3241	0.11	-1.5
3,381,532	-	flgJ	SO3241	0.50	+0.9
3,381,537	-	flgJ	SO3241	0.50	-0.5
3,381,548	+	flgJ	SO3241	0.51	+0.5
3,381,548	+	flgJ	SO3241	0.51	-0.1
3,381,556	-	flgJ	SO3241	0.52	-0.6
3,381,574	+	flgJ	SO3241	0.53	+1.5
3,381,700	-	flgJ	SO3241	0.64	+1.5
3,381,702	+	flgJ	SO3241	0.64	-3.0
3,381,778	-	flgJ	SO3241	0.71	-0.1
3,381,800	+	flgJ	SO3241	0.73	+0.0
3,381,805	+	flgJ	SO3241	0.73	-1.8
3,381,825	+	flgJ	SO3241	0.75	-1.9
3,381,828	-	flgJ	SO3241	0.75	-0.6
3,381,895	-	flgJ	SO3241	0.81	-1.6