Strain Fitness in Shewanella oneidensis MR-1 around SOA0096

Experiment: C.elegans, mixed culture-2

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntSOA0095 and SOA0096 overlap by 1 nucleotidesSOA0096 and SOA0097 are separated by 31 nucleotides SOA0095: SOA0095 - partitioning protein A (NCBI ptt file), at 73,412 to 74,611 SOA0095 SOA0096: SOA0096 - partitioning protein B (NCBI ptt file), at 74,611 to 75,705 SOA0096 SOA0097: SOA0097 - ISSod6, transposase (NCBI ptt file), at 75,737 to 76,495 SOA0097 Position (kb) 74 75 76Strain fitness (log2 ratio) -2 -1 0 1 2at 73.799 kb on + strand, within SOA0095at 73.799 kb on + strand, within SOA0095at 73.825 kb on + strand, within SOA0095at 73.830 kb on + strand, within SOA0095at 73.833 kb on - strand, within SOA0095at 73.836 kb on + strand, within SOA0095at 73.862 kb on + strand, within SOA0095at 74.034 kb on + strand, within SOA0095at 74.034 kb on + strand, within SOA0095at 74.110 kb on - strand, within SOA0095at 74.167 kb on - strand, within SOA0095at 74.235 kb on - strand, within SOA0095at 74.287 kb on - strand, within SOA0095at 74.287 kb on - strand, within SOA0095at 74.287 kb on - strand, within SOA0095at 74.299 kb on + strand, within SOA0095at 74.388 kb on + strand, within SOA0095at 74.475 kb on - strand, within SOA0095at 74.475 kb on - strand, within SOA0095at 74.488 kb on + strand, within SOA0095at 74.496 kb on - strandat 74.503 kb on + strandat 74.511 kb on - strandat 74.638 kb on + strandat 74.646 kb on - strandat 74.746 kb on + strand, within SOA0096at 74.791 kb on + strand, within SOA0096at 74.801 kb on + strand, within SOA0096at 74.896 kb on - strand, within SOA0096at 74.904 kb on - strand, within SOA0096at 74.911 kb on - strand, within SOA0096at 74.911 kb on - strand, within SOA0096at 74.932 kb on - strand, within SOA0096at 75.111 kb on + strand, within SOA0096at 75.118 kb on + strand, within SOA0096at 75.119 kb on - strand, within SOA0096at 75.172 kb on - strand, within SOA0096at 75.177 kb on - strand, within SOA0096at 75.214 kb on - strand, within SOA0096at 75.216 kb on + strand, within SOA0096at 75.224 kb on - strand, within SOA0096at 75.258 kb on + strand, within SOA0096at 75.261 kb on - strand, within SOA0096at 75.471 kb on + strand, within SOA0096at 75.528 kb on + strand, within SOA0096at 75.536 kb on - strand, within SOA0096at 75.536 kb on - strand, within SOA0096at 75.536 kb on - strand, within SOA0096at 75.568 kb on - strand, within SOA0096at 75.643 kb on + strandat 76.571 kb on + strandat 76.571 kb on + strandat 76.574 kb on + strandat 76.585 kb on + strandat 76.609 kb on + strandat 76.609 kb on + strandat 76.609 kb on + strandat 76.609 kb on + strandat 76.612 kb on - strandat 76.617 kb on - strandat 76.617 kb on - strandat 76.617 kb on - strandat 76.617 kb on - strandat 76.651 kb on - strandat 76.653 kb on - strandat 76.677 kb on + strandat 76.677 kb on + strandat 76.677 kb on + strandat 76.677 kb on + strandat 76.677 kb on + strandat 76.677 kb on + strandat 76.677 kb on + strandat 76.677 kb on + strandat 76.677 kb on + strandat 76.685 kb on - strandat 76.685 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction C.elegans, mixed culture-2
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73,799 + SOA0095 0.32 -1.5
73,799 + SOA0095 0.32 -0.9
73,825 + SOA0095 0.34 -1.9
73,830 + SOA0095 0.35 -1.4
73,833 - SOA0095 0.35 +1.3
73,836 + SOA0095 0.35 -0.4
73,862 + SOA0095 0.38 -0.8
74,034 + SOA0095 0.52 +1.3
74,034 + SOA0095 0.52 +2.1
74,110 - SOA0095 0.58 +0.8
74,167 - SOA0095 0.63 -0.7
74,235 - SOA0095 0.69 -1.4
74,287 - SOA0095 0.73 +0.8
74,287 - SOA0095 0.73 +1.1
74,287 - SOA0095 0.73 -0.8
74,299 + SOA0095 0.74 -1.5
74,388 + SOA0095 0.81 -0.3
74,475 - SOA0095 0.89 +0.4
74,475 - SOA0095 0.89 -0.3
74,488 + SOA0095 0.90 -1.3
74,496 - +2.6
74,503 + +1.1
74,511 - -0.7
74,638 + +1.6
74,646 - +0.2
74,746 + SOA0096 0.12 +0.5
74,791 + SOA0096 0.16 -0.9
74,801 + SOA0096 0.17 +1.1
74,896 - SOA0096 0.26 -0.1
74,904 - SOA0096 0.27 +0.2
74,911 - SOA0096 0.27 -1.9
74,911 - SOA0096 0.27 +0.1
74,932 - SOA0096 0.29 -0.2
75,111 + SOA0096 0.46 -1.7
75,118 + SOA0096 0.46 -0.2
75,119 - SOA0096 0.46 -2.0
75,172 - SOA0096 0.51 -0.4
75,177 - SOA0096 0.52 +1.6
75,214 - SOA0096 0.55 -0.6
75,216 + SOA0096 0.55 -1.8
75,224 - SOA0096 0.56 -1.2
75,258 + SOA0096 0.59 +0.6
75,261 - SOA0096 0.59 -0.4
75,471 + SOA0096 0.79 -0.6
75,528 + SOA0096 0.84 +0.1
75,536 - SOA0096 0.84 +1.6
75,536 - SOA0096 0.84 -0.8
75,536 - SOA0096 0.84 -0.3
75,568 - SOA0096 0.87 -1.1
75,643 + -1.5
76,571 + -2.3
76,571 + +0.6
76,574 + +0.5
76,585 + +0.5
76,609 + -0.1
76,609 + -0.4
76,609 + -1.6
76,609 + +0.2
76,612 - -0.8
76,617 - -0.2
76,617 - -2.0
76,617 - -0.9
76,617 - +0.0
76,651 - +0.4
76,653 - +0.4
76,677 + -1.3
76,677 + +1.8
76,677 + +0.0
76,677 + +0.0
76,677 + -2.4
76,677 + -1.0
76,677 + -0.6
76,677 + +0.2
76,677 + +1.1
76,685 - +1.0
76,685 - -0.8

Or see this region's nucleotide sequence