Experiment: C.elegans, mixed culture-2
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SO_A0093 and SOA0094 are separated by 109 nucleotides SOA0094 and SOA0095 are separated by 168 nucleotides SOA0095 and SOA0096 overlap by 1 nucleotides
SO_A0093: SO_A0093 - no description, at 72,253 to 73,026
_A0093
SOA0094: SOA0094 - hypothetical protein (NCBI ptt file), at 73,136 to 73,243
SOA0094
SOA0095: SOA0095 - partitioning protein A (NCBI ptt file), at 73,412 to 74,611
SOA0095
SOA0096: SOA0096 - partitioning protein B (NCBI ptt file), at 74,611 to 75,705
SOA0096
Position (kb) 73
74
75 Strain fitness (log2 ratio) -2
-1
0
1
2 at 73.082 kb on + strand at 73.082 kb on + strand at 73.084 kb on + strand at 73.090 kb on - strand at 73.192 kb on - strand, within SOA0094 at 73.200 kb on - strand, within SOA0094 at 73.205 kb on - strand, within SOA0094 at 73.205 kb on - strand, within SOA0094 at 73.205 kb on - strand, within SOA0094 at 73.216 kb on - strand, within SOA0094 at 73.292 kb on + strand at 73.292 kb on + strand at 73.455 kb on - strand at 73.541 kb on + strand, within SOA0095 at 73.574 kb on + strand, within SOA0095 at 73.799 kb on + strand, within SOA0095 at 73.799 kb on + strand, within SOA0095 at 73.825 kb on + strand, within SOA0095 at 73.830 kb on + strand, within SOA0095 at 73.833 kb on - strand, within SOA0095 at 73.836 kb on + strand, within SOA0095 at 73.862 kb on + strand, within SOA0095 at 74.034 kb on + strand, within SOA0095 at 74.034 kb on + strand, within SOA0095 at 74.110 kb on - strand, within SOA0095 at 74.167 kb on - strand, within SOA0095 at 74.235 kb on - strand, within SOA0095 at 74.287 kb on - strand, within SOA0095 at 74.287 kb on - strand, within SOA0095 at 74.287 kb on - strand, within SOA0095 at 74.299 kb on + strand, within SOA0095 at 74.388 kb on + strand, within SOA0095 at 74.475 kb on - strand, within SOA0095 at 74.475 kb on - strand, within SOA0095 at 74.488 kb on + strand, within SOA0095 at 74.496 kb on - strand at 74.503 kb on + strand at 74.511 kb on - strand at 74.638 kb on + strand at 74.646 kb on - strand at 74.746 kb on + strand, within SOA0096 at 74.791 kb on + strand, within SOA0096 at 74.801 kb on + strand, within SOA0096 at 74.896 kb on - strand, within SOA0096 at 74.904 kb on - strand, within SOA0096 at 74.911 kb on - strand, within SOA0096 at 74.911 kb on - strand, within SOA0096 at 74.932 kb on - strand, within SOA0096 at 75.111 kb on + strand, within SOA0096 at 75.118 kb on + strand, within SOA0096 at 75.119 kb on - strand, within SOA0096 at 75.172 kb on - strand, within SOA0096 at 75.177 kb on - strand, within SOA0096 at 75.214 kb on - strand, within SOA0096 at 75.216 kb on + strand, within SOA0096 at 75.224 kb on - strand, within SOA0096 at 75.258 kb on + strand, within SOA0096 at 75.261 kb on - strand, within SOA0096 at 75.471 kb on + strand, within SOA0096 at 75.528 kb on + strand, within SOA0096 at 75.536 kb on - strand, within SOA0096 at 75.536 kb on - strand, within SOA0096 at 75.536 kb on - strand, within SOA0096 at 75.568 kb on - strand, within SOA0096
Per-strain Table
Position Strand Gene LocusTag Fraction C.elegans, mixed culture-2 remove 73,082 + -2.2 73,082 + +0.2 73,084 + -0.2 73,090 - -1.8 73,192 - SOA0094 0.52 +1.9 73,200 - SOA0094 0.59 -1.0 73,205 - SOA0094 0.64 -0.2 73,205 - SOA0094 0.64 -2.2 73,205 - SOA0094 0.64 -0.5 73,216 - SOA0094 0.74 -0.4 73,292 + +1.4 73,292 + +0.2 73,455 - -0.4 73,541 + SOA0095 0.11 +0.6 73,574 + SOA0095 0.14 -1.7 73,799 + SOA0095 0.32 -1.5 73,799 + SOA0095 0.32 -0.9 73,825 + SOA0095 0.34 -1.9 73,830 + SOA0095 0.35 -1.4 73,833 - SOA0095 0.35 +1.3 73,836 + SOA0095 0.35 -0.4 73,862 + SOA0095 0.38 -0.8 74,034 + SOA0095 0.52 +1.3 74,034 + SOA0095 0.52 +2.1 74,110 - SOA0095 0.58 +0.8 74,167 - SOA0095 0.63 -0.7 74,235 - SOA0095 0.69 -1.4 74,287 - SOA0095 0.73 +0.8 74,287 - SOA0095 0.73 +1.1 74,287 - SOA0095 0.73 -0.8 74,299 + SOA0095 0.74 -1.5 74,388 + SOA0095 0.81 -0.3 74,475 - SOA0095 0.89 +0.4 74,475 - SOA0095 0.89 -0.3 74,488 + SOA0095 0.90 -1.3 74,496 - +2.6 74,503 + +1.1 74,511 - -0.7 74,638 + +1.6 74,646 - +0.2 74,746 + SOA0096 0.12 +0.5 74,791 + SOA0096 0.16 -0.9 74,801 + SOA0096 0.17 +1.1 74,896 - SOA0096 0.26 -0.1 74,904 - SOA0096 0.27 +0.2 74,911 - SOA0096 0.27 -1.9 74,911 - SOA0096 0.27 +0.1 74,932 - SOA0096 0.29 -0.2 75,111 + SOA0096 0.46 -1.7 75,118 + SOA0096 0.46 -0.2 75,119 - SOA0096 0.46 -2.0 75,172 - SOA0096 0.51 -0.4 75,177 - SOA0096 0.52 +1.6 75,214 - SOA0096 0.55 -0.6 75,216 + SOA0096 0.55 -1.8 75,224 - SOA0096 0.56 -1.2 75,258 + SOA0096 0.59 +0.6 75,261 - SOA0096 0.59 -0.4 75,471 + SOA0096 0.79 -0.6 75,528 + SOA0096 0.84 +0.1 75,536 - SOA0096 0.84 +1.6 75,536 - SOA0096 0.84 -0.8 75,536 - SOA0096 0.84 -0.3 75,568 - SOA0096 0.87 -1.1
Or see this region's nucleotide sequence