Strain Fitness in Shewanella oneidensis MR-1 around SOA0042

Experiment: C.elegans, mixed culture-2

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	C.elegans, mixed culture-2
30,540	+		SO_A0039	0.88	-0.2
30,540	+		SO_A0039	0.88	+0.4
30,540	+		SO_A0039	0.88	+0.5
30,540	+		SO_A0039	0.88	-0.9
30,540	+		SO_A0039	0.88	-1.1
30,540	+		SO_A0039	0.88	-0.5
30,540	+		SO_A0039	0.88	+0.5
30,540	+		SO_A0039	0.88	-1.0
30,540	+		SO_A0039	0.88	-0.5
30,545	+		SO_A0039	0.89	-0.6
30,548	-		SO_A0039	0.89	-0.3
30,548	-		SO_A0039	0.89	-1.4
30,548	-		SO_A0039	0.89	-0.2
30,548	-		SO_A0039	0.89	+0.5
30,548	-		SO_A0039	0.89	+0.4
30,548	-		SO_A0039	0.89	+0.3
30,548	-		SO_A0039	0.89	+0.6
30,548	-		SO_A0039	0.89	-2.1
30,548	-		SO_A0039	0.89	+1.8
30,575	-				-0.4
30,586	+				-0.9
30,586	+				-0.5
30,594	-				+1.5
30,594	-				+1.0
30,602	-				-2.2
30,602	-				+0.4
30,602	-				+0.1
30,614	+				-0.2
30,614	+				-0.5
30,616	-				-0.8
30,631	+				+1.6
30,631	+				+0.9
30,639	+				-0.4
30,639	+				+0.2
30,639	-				-0.4
30,646	+				+1.1
30,646	+				-0.7
30,647	-				-0.4
30,653	+				+0.6
30,680	+				+0.7
30,681	+				+0.4
30,688	+				+0.1
30,688	-				+0.1
30,690	-				-1.7
30,696	-				-1.3
30,696	-				-0.4
30,696	-				+0.4
30,750	+				+0.6
30,750	+				-2.5
30,750	+				+0.4
30,750	+				-0.3
30,750	+				-1.2
30,750	+				+0.4
30,750	+				-2.8
30,750	+				-2.5
30,750	+				-2.2
30,750	+				-0.1
30,750	+				-0.4
30,750	+				-0.0
30,750	+				+0.2
30,750	+				+2.1
30,758	+				-1.4
30,758	+				+1.0
30,758	+				-0.1
30,758	-				-0.6
30,758	-				+0.1
30,758	-				-1.0
30,758	-				-1.6
30,758	-				+0.4
30,758	-				-0.3
30,758	-				+0.7
30,758	-				-1.1
30,758	-				-0.4
30,758	-				+0.2
30,758	-				-0.7
30,758	-				-0.9
30,758	-				-0.1
30,758	-				+0.4
30,758	-				-1.2
30,758	-				+1.9
30,765	+				-0.3
30,766	-				+1.4
30,766	-				+0.6
30,766	-				+1.3
30,766	-				+0.8
30,795	+				-2.2
30,795	+				-3.0
30,810	-				+0.2
30,818	+				-0.5
30,826	-				+1.3
30,874	-		SOA0040	0.17	+1.6
30,919	+		SOA0040	0.35	+0.8
30,919	+		SOA0040	0.35	+0.8
30,919	+		SOA0040	0.35	+2.1
30,923	+		SOA0040	0.36	-1.4
30,933	+		SOA0040	0.40	+0.6
30,934	+		SOA0040	0.40	+1.3
30,967	-		SOA0040	0.54	+1.3
31,058	+				+1.6
31,065	+				+3.2
31,065	+				-1.7
31,065	+				+0.8
31,065	+				-1.3
31,070	+				+2.2
31,070	+				+3.5
31,070	+				+1.6
31,070	+				+0.9
31,073	+				+1.0
31,073	-				+2.6
31,078	-				+1.8
31,088	+				-0.1
31,095	-				+1.5
31,098	+				+0.4
31,098	+				+1.2
31,098	+				+1.3
31,098	+				+0.8
31,098	+				+2.6
31,102	+				+2.2
31,102	+				+0.6
31,106	-				+1.3
31,106	-				+0.7
31,106	-				+3.6
31,106	-				+0.8
31,106	-				+2.2
31,106	-				+4.1
31,106	-				+0.8
31,107	+				+1.4
31,108	+				+1.8
31,108	+				+0.9
31,108	+				-0.4
31,108	+				-0.3
31,108	+				+1.6
31,108	+				-0.1
31,108	+				+0.2
31,108	+				+2.5
31,108	+				-0.6
31,109	+		SOA0041	0.10	+2.3
31,109	+		SOA0041	0.10	+1.7
31,109	+		SOA0041	0.10	+1.7
31,109	+		SOA0041	0.10	+1.1
31,109	+		SOA0041	0.10	+1.8
31,109	+		SOA0041	0.10	+1.4
31,109	+		SOA0041	0.10	+2.1
31,109	+		SOA0041	0.10	+1.9
31,114	+		SOA0041	0.12	-0.5
31,114	+		SOA0041	0.12	+1.5
31,115	-		SOA0041	0.12	+1.5
31,116	-		SOA0041	0.12	+1.3
31,116	-		SOA0041	0.12	+1.0
31,116	-		SOA0041	0.12	+0.9
31,116	-		SOA0041	0.12	+0.8
31,116	-		SOA0041	0.12	+1.1
31,116	-		SOA0041	0.12	+1.8
31,116	-		SOA0041	0.12	-0.4
31,116	-		SOA0041	0.12	+0.3
31,116	-		SOA0041	0.12	+0.1
31,117	-		SOA0041	0.13	+0.2
31,117	-		SOA0041	0.13	-0.4
31,117	-		SOA0041	0.13	+1.2
31,117	-		SOA0041	0.13	-0.2
31,117	-		SOA0041	0.13	+1.2
31,117	-		SOA0041	0.13	+1.1
31,117	-		SOA0041	0.13	+0.6
31,122	-		SOA0041	0.14	-0.2
31,122	-		SOA0041	0.14	+2.6
31,122	-		SOA0041	0.14	+0.9
31,122	-		SOA0041	0.14	+1.7
31,122	-		SOA0041	0.14	+1.6
31,143	+		SOA0041	0.21	+2.1
31,143	+		SOA0041	0.21	+1.0
31,143	+		SOA0041	0.21	+0.1
31,143	+		SOA0041	0.21	+1.7
31,151	-		SOA0041	0.23	+1.7
31,151	-		SOA0041	0.23	+1.8
31,151	-		SOA0041	0.23	+1.2
31,153	+		SOA0041	0.24	+0.8
31,160	+		SOA0041	0.26	-0.1
31,163	-		SOA0041	0.27	+2.0
31,173	+		SOA0041	0.30	+2.0
31,174	+		SOA0041	0.31	+1.0
31,174	+		SOA0041	0.31	+1.6
31,174	+		SOA0041	0.31	+1.9
31,174	+		SOA0041	0.31	+2.6
31,174	+		SOA0041	0.31	-0.3
31,174	+		SOA0041	0.31	+2.2
31,174	+		SOA0041	0.31	+1.2
31,174	+		SOA0041	0.31	+2.6
31,174	+		SOA0041	0.31	+1.8
31,174	+		SOA0041	0.31	+1.8
31,182	-		SOA0041	0.33	+2.3
31,182	-		SOA0041	0.33	+1.8
31,182	-		SOA0041	0.33	+1.4
31,182	-		SOA0041	0.33	+1.3
31,182	-		SOA0041	0.33	+0.5
31,182	-		SOA0041	0.33	+1.3
31,182	-		SOA0041	0.33	+1.1
31,182	-		SOA0041	0.33	+2.6
31,182	-		SOA0041	0.33	+1.8
31,187	+		SOA0041	0.35	+0.9
31,187	+		SOA0041	0.35	+0.9
31,187	+		SOA0041	0.35	+0.2
31,187	+		SOA0041	0.35	+1.6
31,187	+		SOA0041	0.35	+1.4
31,187	+		SOA0041	0.35	+2.1
31,187	+		SOA0041	0.35	+0.8
31,187	+		SOA0041	0.35	+2.1
31,187	+		SOA0041	0.35	+1.1
31,187	+		SOA0041	0.35	+0.5
31,187	+		SOA0041	0.35	+0.6
31,187	+		SOA0041	0.35	+0.5
31,187	+		SOA0041	0.35	+1.3
31,195	+				+1.6
31,195	-		SOA0041	0.37	+1.0
31,195	-		SOA0041	0.37	+2.5
31,195	-		SOA0041	0.37	+1.9
31,195	-		SOA0041	0.37	+1.5
31,195	-		SOA0041	0.37	+2.3
31,195	-		SOA0041	0.37	+1.8
31,195	-		SOA0041	0.37	-1.6
31,195	-		SOA0041	0.37	-1.1
31,195	-		SOA0041	0.37	+0.3
31,195	-		SOA0041	0.37	+0.7
31,202	-		SOA0041	0.39	+2.8
31,209	+		SOA0041	0.42	+1.2
31,209	+		SOA0041	0.42	+1.5
31,209	+		SOA0041	0.42	+1.1
31,209	+		SOA0041	0.42	+0.3
31,209	+		SOA0041	0.42	+1.3
31,216	+		SOA0041	0.44	+1.3
31,216	+		SOA0041	0.44	+1.6
31,217	-		SOA0041	0.44	+1.5
31,217	-		SOA0041	0.44	+2.5
31,217	-		SOA0041	0.44	+1.5
31,217	-		SOA0041	0.44	+2.6
31,217	-		SOA0041	0.44	+2.4
31,217	-		SOA0041	0.44	-0.3
31,222	+		SOA0041	0.46	+2.2
31,222	+		SOA0041	0.46	+1.2
31,222	+		SOA0041	0.46	+2.1
31,222	+		SOA0041	0.46	+1.9
31,222	+		SOA0041	0.46	+0.3
31,222	+		SOA0041	0.46	+0.4
31,222	+		SOA0041	0.46	-0.2
31,222	+		SOA0041	0.46	+1.6
31,222	+		SOA0041	0.46	+2.0
31,222	+		SOA0041	0.46	+2.1
31,222	+		SOA0041	0.46	+2.0
31,222	+		SOA0041	0.46	+1.4
31,222	+		SOA0041	0.46	+0.6
31,222	+		SOA0041	0.46	+2.9
31,222	+		SOA0041	0.46	+1.8
31,222	+		SOA0041	0.46	+1.5
31,222	+		SOA0041	0.46	+1.8
31,222	+		SOA0041	0.46	+1.7
31,222	+		SOA0041	0.46	+0.6
31,222	+		SOA0041	0.46	-0.8
31,222	+		SOA0041	0.46	+1.4
31,222	+		SOA0041	0.46	+0.7
31,222	+		SOA0041	0.46	+0.9
31,222	+		SOA0041	0.46	+1.9
31,222	+		SOA0041	0.46	+1.2
31,222	+		SOA0041	0.46	+1.1
31,222	+		SOA0041	0.46	+1.4
31,222	+		SOA0041	0.46	+1.4
31,222	+		SOA0041	0.46	+1.0
31,222	+		SOA0041	0.46	+4.0
31,222	+		SOA0041	0.46	+0.8
31,222	+		SOA0041	0.46	+0.9
31,222	+		SOA0041	0.46	+0.8
31,222	+		SOA0041	0.46	+1.9
31,222	+		SOA0041	0.46	+0.1
31,222	+		SOA0041	0.46	+2.0
31,222	+		SOA0041	0.46	+0.6
31,222	+		SOA0041	0.46	+0.8
31,222	+		SOA0041	0.46	+1.5
31,222	+		SOA0041	0.46	+1.3
31,222	+		SOA0041	0.46	+1.0
31,222	+		SOA0041	0.46	+1.1
31,222	+		SOA0041	0.46	-0.1
31,222	+		SOA0041	0.46	+1.3
31,223	+		SOA0041	0.46	+1.1
31,223	+		SOA0041	0.46	+3.9
31,223	+		SOA0041	0.46	+0.6
31,223	+		SOA0041	0.46	+1.3
31,223	+		SOA0041	0.46	+0.4
31,223	+		SOA0041	0.46	+1.5
31,223	+		SOA0041	0.46	+1.0
31,223	+		SOA0041	0.46	+2.1
31,223	+		SOA0041	0.46	+1.5
31,223	+		SOA0041	0.46	+3.3
31,223	+		SOA0041	0.46	-1.1
31,223	+		SOA0041	0.46	-1.0
31,223	+		SOA0041	0.46	-0.9
31,223	+		SOA0041	0.46	+1.8
31,223	+		SOA0041	0.46	+0.0
31,223	+		SOA0041	0.46	+1.0
31,223	+		SOA0041	0.46	+2.4
31,223	+		SOA0041	0.46	-0.2
31,223	+		SOA0041	0.46	+1.5
31,223	+		SOA0041	0.46	+1.8
31,223	+		SOA0041	0.46	+2.7
31,223	+		SOA0041	0.46	+1.1
31,223	+		SOA0041	0.46	+1.3
31,223	+		SOA0041	0.46	+1.8
31,223	+		SOA0041	0.46	+1.0
31,223	+		SOA0041	0.46	+2.5
31,223	+		SOA0041	0.46	+1.4
31,223	+		SOA0041	0.46	+1.7
31,223	+		SOA0041	0.46	+1.8
31,223	+		SOA0041	0.46	+1.3
31,223	+		SOA0041	0.46	-0.0
31,223	+		SOA0041	0.46	+0.5
31,223	+		SOA0041	0.46	+2.0
31,223	+		SOA0041	0.46	+1.5
31,223	+		SOA0041	0.46	-0.5
31,223	+		SOA0041	0.46	+1.1
31,223	+		SOA0041	0.46	-0.1
31,223	+		SOA0041	0.46	+0.6
31,223	+		SOA0041	0.46	+1.8
31,223	+		SOA0041	0.46	+1.1
31,223	+		SOA0041	0.46	-0.0
31,223	+		SOA0041	0.46	-0.5
31,223	+		SOA0041	0.46	+1.3
31,223	+		SOA0041	0.46	+1.2
31,223	+		SOA0041	0.46	+0.2
31,223	+		SOA0041	0.46	+1.1
31,223	+		SOA0041	0.46	+2.1
31,223	+		SOA0041	0.46	+2.5
31,223	+		SOA0041	0.46	+1.5
31,223	+		SOA0041	0.46	+1.8
31,223	+		SOA0041	0.46	+1.1
31,223	+		SOA0041	0.46	+1.8
31,223	+		SOA0041	0.46	+1.0
31,223	+		SOA0041	0.46	+1.8
31,223	+		SOA0041	0.46	+1.1
31,223	+		SOA0041	0.46	+1.0
31,223	+		SOA0041	0.46	+0.8
31,223	+		SOA0041	0.46	+2.2
31,223	+		SOA0041	0.46	+0.7
31,223	+		SOA0041	0.46	+2.3
31,223	+		SOA0041	0.46	+2.6
31,223	+		SOA0041	0.46	+0.8
31,223	+		SOA0041	0.46	+0.2
31,223	+		SOA0041	0.46	+1.1
31,223	+		SOA0041	0.46	+2.3
31,223	+		SOA0041	0.46	+1.0
31,223	+		SOA0041	0.46	+1.1
31,223	+		SOA0041	0.46	+1.2
31,223	+		SOA0041	0.46	+1.9
31,223	+		SOA0041	0.46	+0.9
31,223	+		SOA0041	0.46	+0.9
31,223	+		SOA0041	0.46	-0.2
31,223	+		SOA0041	0.46	+1.7
31,223	+		SOA0041	0.46	+0.8
31,223	+		SOA0041	0.46	+0.1
31,223	+		SOA0041	0.46	+2.1
31,223	+		SOA0041	0.46	+1.3
31,223	+		SOA0041	0.46	-0.0
31,223	+		SOA0041	0.46	-1.1
31,223	+		SOA0041	0.46	+2.0
31,223	+		SOA0041	0.46	+1.9
31,223	+		SOA0041	0.46	+1.5
31,223	+		SOA0041	0.46	-0.2
31,223	+		SOA0041	0.46	-0.4
31,223	+		SOA0041	0.46	+2.5
31,223	+		SOA0041	0.46	+1.6
31,223	+		SOA0041	0.46	+1.9
31,223	+		SOA0041	0.46	+2.1
31,223	+		SOA0041	0.46	+0.6
31,223	+		SOA0041	0.46	+1.4
31,223	+		SOA0041	0.46	+1.0
31,223	+		SOA0041	0.46	+1.1
31,223	+		SOA0041	0.46	+1.0
31,223	+		SOA0041	0.46	+2.6
31,223	+		SOA0041	0.46	+0.6
31,223	+		SOA0041	0.46	+1.7
31,223	+		SOA0041	0.46	+1.6
31,223	+		SOA0041	0.46	+1.4
31,223	+		SOA0041	0.46	+0.5
31,223	+		SOA0041	0.46	+1.4
31,223	+		SOA0041	0.46	+2.3
31,223	+		SOA0041	0.46	+1.6
31,223	+		SOA0041	0.46	+0.8
31,223	+		SOA0041	0.46	+0.5
31,223	+		SOA0041	0.46	+1.1
31,223	+		SOA0041	0.46	+0.5
31,223	+		SOA0041	0.46	+1.8
31,223	+		SOA0041	0.46	+0.6
31,223	+		SOA0041	0.46	+1.8
31,223	+		SOA0041	0.46	+2.1
31,223	+		SOA0041	0.46	+1.5
31,223	+		SOA0041	0.46	+1.8
31,223	+		SOA0041	0.46	+0.3
31,223	+		SOA0041	0.46	+1.1
31,223	+		SOA0041	0.46	-0.3
31,223	+		SOA0041	0.46	+2.3
31,223	+		SOA0041	0.46	+1.1
31,223	+		SOA0041	0.46	+1.8
31,223	+		SOA0041	0.46	+0.9
31,223	+		SOA0041	0.46	+0.7
31,223	+		SOA0041	0.46	-0.2
31,223	+		SOA0041	0.46	+2.0
31,223	+		SOA0041	0.46	+0.4
31,223	+		SOA0041	0.46	+0.1
31,223	+		SOA0041	0.46	+0.0
31,223	+		SOA0041	0.46	+1.6
31,223	+		SOA0041	0.46	+1.3
31,223	+		SOA0041	0.46	+1.4
31,223	+		SOA0041	0.46	+1.2
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31,725	+		SOA0042	0.38	-0.1
31,725	+		SOA0042	0.38	+0.7
31,725	+		SOA0042	0.38	-1.2
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31,725	+		SOA0042	0.38	+0.4
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31,725	+		SOA0042	0.38	-1.3
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31,725	+		SOA0042	0.38	-1.1
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31,733	-		SOA0042	0.40	-1.9
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31,733	-		SOA0042	0.40	+0.5
31,733	-		SOA0042	0.40	+1.1
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31,733	-		SOA0042	0.40	-1.2
31,733	-		SOA0042	0.40	+1.0
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31,741	-		SOA0042	0.41	-2.9
31,741	-		SOA0042	0.41	+0.8
31,741	-		SOA0042	0.41	+0.2
31,741	-		SOA0042	0.41	+2.6
31,741	-		SOA0042	0.41	+1.4
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31,781	+		SOA0042	0.49	+0.4
31,781	+		SOA0042	0.49	+1.9
31,781	+		SOA0042	0.49	+1.5
31,781	+		SOA0042	0.49	+0.3
31,781	+		SOA0042	0.49	-0.3
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31,781	+		SOA0042	0.49	+0.2
31,781	+		SOA0042	0.49	-0.6
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31,789	-		SOA0042	0.51	+0.6
31,789	-		SOA0042	0.51	+1.1
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31,789	-		SOA0042	0.51	+1.3
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31,789	-		SOA0042	0.51	-0.7
31,789	-		SOA0042	0.51	+1.0
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31,789	-		SOA0042	0.51	+2.3
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31,789	-		SOA0042	0.51	-0.2
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31,789	-		SOA0042	0.51	-1.2
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31,790	+		SOA0042	0.51	-0.6
31,830	+		SOA0042	0.60	+2.5
31,838	-		SOA0042	0.61	-2.1
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31,847	+		SOA0042	0.63	+0.7
31,855	-		SOA0042	0.65	+1.1
31,855	-		SOA0042	0.65	-1.2
31,857	-		SOA0042	0.65	-0.1
31,910	+		SOA0042	0.76	+0.9
31,910	+		SOA0042	0.76	+2.1
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31,913	-		SOA0042	0.76	-0.0
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31,919	-		SOA0042	0.78	-0.4
31,919	-		SOA0042	0.78	-1.5
31,919	-		SOA0042	0.78	-0.1
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31,931	+		SOA0042	0.80	-1.1
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31,941	+		SOA0042	0.82	+1.1
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31,942	+		SOA0042	0.82	+1.7
31,950	-		SOA0042	0.84	-1.2
31,951	+		SOA0042	0.84	+1.6
31,953	+		SOA0042	0.85	+0.8
31,953	+		SOA0042	0.85	-0.1
31,953	+		SOA0042	0.85	+0.4
31,953	+		SOA0042	0.85	-0.4
31,960	-		SOA0042	0.86	+0.1
31,961	-		SOA0042	0.86	+1.3
31,961	-		SOA0042	0.86	-1.1
31,979	+				-0.7
31,979	+				+0.9
31,980	+				-1.7
31,982	+				-1.6
31,987	+				-2.1
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31,987	-				-1.3
31,987	-				+0.9
31,987	-				-0.1
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31,990	-				+0.3
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31,995	-				-0.8
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31,997	+				+2.3
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32,002	+				-3.0
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32,002	+				+0.6
32,002	+				+1.4
32,002	+				-1.9
32,002	+				-0.7
32,002	+				-1.3
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32,009	+				+2.3
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32,009	+				-2.4
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32,010	-				+1.2
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32,017	+				-2.1
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32,025	-				-0.3
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32,037	+				-2.9
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32,044	+				+0.7
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32,044	+				+1.3
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32,090	-				-1.1
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32,646	+		SOA0044	0.13	-0.7
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32,665	-		SOA0044	0.15	-2.1
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32,767	+		SOA0044	0.24	-0.1
32,767	+		SOA0044	0.24	-2.3
32,767	+		SOA0044	0.24	-0.8
32,767	+		SOA0044	0.24	-1.0
32,767	+		SOA0044	0.24	-0.8
32,767	+		SOA0044	0.24	-1.1
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32,767	+		SOA0044	0.24	-1.3
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32,767	+		SOA0044	0.24	-1.0
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32,775	-		SOA0044	0.25	-0.1
32,775	-		SOA0044	0.25	-0.0
32,775	-		SOA0044	0.25	-3.2
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32,775	-		SOA0044	0.25	+1.4
32,775	-		SOA0044	0.25	+1.1
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32,872	+		SOA0044	0.33	+0.5
32,877	+		SOA0044	0.34	-1.3
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32,885	-		SOA0044	0.34	-0.2
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32,910	+		SOA0044	0.37	-0.9
32,918	-		SOA0044	0.37	-1.2
32,918	-		SOA0044	0.37	-0.6
32,924	+		SOA0044	0.38	-1.3
32,929	+		SOA0044	0.38	-2.3
32,954	+		SOA0044	0.40	-0.8
32,955	+		SOA0044	0.41	-1.5
33,012	+		SOA0044	0.46	-0.2
33,017	+		SOA0044	0.46	+0.2
33,025	-		SOA0044	0.47	-0.5