Experiment: C.elegans, mixed culture-2
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SO_A0020 and SO_A0021 are separated by 32 nucleotides SO_A0021 and higB are separated by 311 nucleotides higB and higA are separated by 74 nucleotides higA and SOA0024 are separated by 69 nucleotides SOA0024 and SO_A0025 overlap by 810 nucleotides
SO_A0020: SO_A0020 - no description, at 17,324 to 18,154
_A0020
SO_A0021: SO_A0021 - no description, at 18,187 to 18,462
_A0021
SOA0022: higB - proteic killer active protein (NCBI ptt file), at 18,774 to 19,079
higB
SOA0023: higA - proteic killer suppressor protein (NCBI ptt file), at 19,154 to 19,453
higA
SOA0024: SOA0024 - ISSod1, transposase OrfB (NCBI ptt file), at 19,523 to 20,332
SOA0024
SO_A0025: SO_A0025 - ISSod1, transposase OrfA (NCBI), at 19,523 to 20,682
_A0025
Position (kb) 19
20 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 18.193 kb on - strand at 18.411 kb on - strand, within SO_A0021 at 18.423 kb on - strand, within SO_A0021 at 18.450 kb on + strand at 18.456 kb on + strand at 18.461 kb on + strand at 18.461 kb on + strand at 18.461 kb on + strand at 18.461 kb on + strand at 18.478 kb on - strand at 18.496 kb on + strand at 18.498 kb on + strand at 18.506 kb on + strand at 18.506 kb on - strand at 18.506 kb on - strand at 18.511 kb on + strand at 18.511 kb on + strand at 18.514 kb on + strand at 18.628 kb on + strand at 18.628 kb on + strand at 18.628 kb on + strand at 18.629 kb on + strand at 18.831 kb on + strand, within higB at 18.837 kb on + strand, within higB at 18.837 kb on + strand, within higB at 18.837 kb on + strand, within higB at 18.837 kb on + strand, within higB at 18.837 kb on + strand, within higB at 18.837 kb on + strand, within higB at 18.837 kb on + strand, within higB at 18.837 kb on + strand, within higB at 18.837 kb on + strand, within higB at 18.838 kb on + strand, within higB at 18.839 kb on + strand, within higB at 18.839 kb on + strand, within higB at 18.839 kb on + strand, within higB at 18.847 kb on - strand, within higB at 18.854 kb on + strand, within higB at 18.854 kb on + strand, within higB at 18.854 kb on + strand, within higB at 18.854 kb on + strand, within higB at 18.854 kb on + strand, within higB at 18.861 kb on + strand, within higB at 18.861 kb on + strand, within higB at 18.861 kb on + strand, within higB at 18.861 kb on + strand, within higB at 18.874 kb on + strand, within higB at 18.878 kb on + strand, within higB at 18.883 kb on + strand, within higB at 18.883 kb on + strand, within higB at 18.883 kb on + strand, within higB at 18.883 kb on + strand, within higB at 18.883 kb on + strand, within higB at 18.883 kb on + strand, within higB at 18.883 kb on + strand, within higB at 18.883 kb on + strand, within higB at 18.891 kb on - strand, within higB at 18.891 kb on - strand, within higB at 18.902 kb on + strand, within higB at 18.910 kb on - strand, within higB at 18.910 kb on - strand, within higB at 18.920 kb on + strand, within higB at 18.965 kb on + strand, within higB at 18.965 kb on + strand, within higB at 18.965 kb on + strand, within higB at 18.965 kb on + strand at 18.965 kb on + strand, within higB at 18.965 kb on + strand, within higB at 18.965 kb on + strand, within higB at 18.965 kb on + strand, within higB at 18.965 kb on + strand, within higB at 18.965 kb on + strand, within higB at 18.965 kb on + strand, within higB at 18.965 kb on + strand, within higB at 18.965 kb on + strand, within higB at 18.965 kb on + strand, within higB at 18.973 kb on + strand, within higB at 18.973 kb on - strand, within higB at 19.004 kb on + strand, within higB at 19.024 kb on + strand, within higB at 19.024 kb on + strand, within higB at 19.032 kb on - strand, within higB at 19.057 kb on - strand at 19.070 kb on + strand at 19.070 kb on + strand at 19.078 kb on - strand at 19.103 kb on + strand at 19.394 kb on + strand, within higA at 19.394 kb on + strand, within higA at 19.394 kb on + strand, within higA at 19.394 kb on + strand, within higA at 19.394 kb on + strand, within higA at 19.412 kb on + strand, within higA at 19.412 kb on + strand, within higA at 19.412 kb on + strand, within higA at 19.412 kb on + strand at 19.412 kb on + strand, within higA at 19.412 kb on + strand, within higA at 19.412 kb on + strand, within higA at 19.412 kb on + strand, within higA at 19.412 kb on + strand, within higA at 19.412 kb on + strand, within higA at 19.441 kb on + strand at 19.447 kb on + strand at 19.519 kb on - strand at 19.519 kb on - strand at 19.519 kb on - strand at 19.540 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction C.elegans, mixed culture-2 remove 18,193 - -0.2 18,411 - SO_A0021 0.81 -0.6 18,423 - SO_A0021 0.86 +1.3 18,450 + -0.4 18,456 + -2.2 18,461 + -3.1 18,461 + -2.1 18,461 + -0.6 18,461 + -2.3 18,478 - -0.4 18,496 + +0.1 18,498 + +0.2 18,506 + +0.2 18,506 - +0.5 18,506 - +0.6 18,511 + -0.9 18,511 + -0.2 18,514 + -0.2 18,628 + +1.8 18,628 + -1.9 18,628 + -0.8 18,629 + -0.6 18,831 + higB SOA0022 0.19 -0.2 18,837 + higB SOA0022 0.21 -1.3 18,837 + higB SOA0022 0.21 -0.5 18,837 + higB SOA0022 0.21 +0.3 18,837 + higB SOA0022 0.21 -1.4 18,837 + higB SOA0022 0.21 -0.6 18,837 + higB SOA0022 0.21 -0.6 18,837 + higB SOA0022 0.21 -2.0 18,837 + higB SOA0022 0.21 +1.8 18,837 + higB SOA0022 0.21 -0.3 18,838 + higB SOA0022 0.21 +0.1 18,839 + higB SOA0022 0.21 -2.3 18,839 + higB SOA0022 0.21 +0.0 18,839 + higB SOA0022 0.21 +1.9 18,847 - higB SOA0022 0.24 +3.6 18,854 + higB SOA0022 0.26 +0.0 18,854 + higB SOA0022 0.26 -1.1 18,854 + higB SOA0022 0.26 +0.2 18,854 + higB SOA0022 0.26 -0.3 18,854 + higB SOA0022 0.26 +0.5 18,861 + higB SOA0022 0.28 +1.8 18,861 + higB SOA0022 0.28 -0.8 18,861 + higB SOA0022 0.28 +0.6 18,861 + higB SOA0022 0.28 +0.2 18,874 + higB SOA0022 0.33 +0.8 18,878 + higB SOA0022 0.34 -1.7 18,883 + higB SOA0022 0.36 +0.8 18,883 + higB SOA0022 0.36 +0.9 18,883 + higB SOA0022 0.36 +0.5 18,883 + higB SOA0022 0.36 +1.6 18,883 + higB SOA0022 0.36 +0.1 18,883 + higB SOA0022 0.36 -0.5 18,883 + higB SOA0022 0.36 +1.0 18,883 + higB SOA0022 0.36 -1.8 18,891 - higB SOA0022 0.38 +0.4 18,891 - higB SOA0022 0.38 +3.6 18,902 + higB SOA0022 0.42 -0.7 18,910 - higB SOA0022 0.44 +1.6 18,910 - higB SOA0022 0.44 -0.4 18,920 + higB SOA0022 0.48 -0.4 18,965 + higB SOA0022 0.62 +0.1 18,965 + higB SOA0022 0.62 +2.5 18,965 + higB SOA0022 0.62 +0.5 18,965 + +1.6 18,965 + higB SOA0022 0.62 -0.9 18,965 + higB SOA0022 0.62 -0.5 18,965 + higB SOA0022 0.62 -0.1 18,965 + higB SOA0022 0.62 +0.9 18,965 + higB SOA0022 0.62 -1.1 18,965 + higB SOA0022 0.62 -2.9 18,965 + higB SOA0022 0.62 +1.3 18,965 + higB SOA0022 0.62 +2.4 18,965 + higB SOA0022 0.62 -1.0 18,965 + higB SOA0022 0.62 +1.4 18,973 + higB SOA0022 0.65 -0.2 18,973 - higB SOA0022 0.65 -0.1 19,004 + higB SOA0022 0.75 -0.2 19,024 + higB SOA0022 0.82 -1.9 19,024 + higB SOA0022 0.82 +0.5 19,032 - higB SOA0022 0.84 +3.6 19,057 - +0.2 19,070 + -1.4 19,070 + -2.3 19,078 - +3.6 19,103 + +0.6 19,394 + higA SOA0023 0.80 +0.6 19,394 + higA SOA0023 0.80 +1.3 19,394 + higA SOA0023 0.80 -2.4 19,394 + higA SOA0023 0.80 -0.2 19,394 + higA SOA0023 0.80 +0.5 19,412 + higA SOA0023 0.86 +0.6 19,412 + higA SOA0023 0.86 +1.1 19,412 + higA SOA0023 0.86 -1.9 19,412 + +1.3 19,412 + higA SOA0023 0.86 -0.5 19,412 + higA SOA0023 0.86 -0.9 19,412 + higA SOA0023 0.86 -1.0 19,412 + higA SOA0023 0.86 -0.6 19,412 + higA SOA0023 0.86 -2.4 19,412 + higA SOA0023 0.86 +0.0 19,441 + -1.6 19,447 + -2.0 19,519 - +0.0 19,519 - +0.6 19,519 - -0.2 19,540 - -1.0
Or see this region's nucleotide sequence