Strain Fitness in Shewanella oneidensis MR-1 around SO4604

Experiment: C.elegans, mixed culture-2

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	C.elegans, mixed culture-2
4,799,054	-				-1.0
4,799,093	+				+0.8
4,799,319	+	lexA	SO4603	0.22	+0.2
4,799,319	+	lexA	SO4603	0.22	+2.5
4,799,319	+	lexA	SO4603	0.22	-0.8
4,799,319	+	lexA	SO4603	0.22	+0.6
4,799,327	-	lexA	SO4603	0.23	+1.0
4,799,327	-	lexA	SO4603	0.23	+1.0
4,799,327	-	lexA	SO4603	0.23	-0.5
4,799,508	-	lexA	SO4603	0.52	+0.2
4,799,541	+	lexA	SO4603	0.58	+0.1
4,799,541	+	lexA	SO4603	0.58	-0.5
4,799,599	+	lexA	SO4603	0.67	-1.2
4,799,721	+	lexA	SO4603	0.87	-1.1
4,799,768	+				+0.2
4,799,776	-				-1.3
4,799,776	-				-0.7
4,799,784	-				-1.8
4,799,816	-				-0.1
4,799,823	-				+0.2
4,799,823	-				-0.6
4,799,833	-				-0.5
4,799,848	+				-0.3
4,799,861	-		SO4604	0.12	+2.3
4,799,917	-		SO4604	0.23	-0.5
4,799,937	-		SO4604	0.27	+0.3
4,800,078	+		SO4604	0.54	+0.2
4,800,094	-		SO4604	0.58	+0.3
4,800,211	+		SO4604	0.80	+1.0
4,800,340	-				-0.8
4,800,536	-				+0.0
4,800,541	+				+0.7
4,800,545	+				-1.3
4,800,549	-				+0.8
4,800,601	-				+0.5
4,800,650	+				-1.4
4,800,675	+				+1.8
4,800,678	-				-0.7
4,800,735	-				-0.2
4,800,761	+				-0.5
4,800,797	-				-1.2
4,800,797	-				+1.3
4,800,832	-				-0.9
4,800,845	+				-0.7
4,800,878	-		SO4606	0.11	+1.0
4,801,113	-		SO4606	0.26	-1.6
4,801,157	-		SO4606	0.29	-0.8
4,801,177	+		SO4606	0.30	-1.0
4,801,177	+		SO4606	0.30	+0.7
4,801,185	-		SO4606	0.30	-1.8
4,801,185	-		SO4606	0.30	+0.2
4,801,185	-		SO4606	0.30	-0.5
4,801,185	-		SO4606	0.30	-0.0
4,801,208	+		SO4606	0.32	-0.6
4,801,215	+		SO4606	0.32	-0.5
4,801,250	+		SO4606	0.35	+0.1
4,801,257	+		SO4606	0.35	+1.5
4,801,257	+		SO4606	0.35	+1.5
4,801,265	-		SO4606	0.36	+0.8