Strain Fitness in Shewanella oneidensis MR-1 around SO4566

Experiment: C.elegans, mixed culture-2

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	C.elegans, mixed culture-2
4,761,837	+		SO_4565	0.25	+0.5
4,761,846	-		SO_4565	0.26	+0.5
4,761,892	-		SO_4565	0.30	+1.6
4,761,914	-		SO_4565	0.31	+0.4
4,761,949	-		SO_4565	0.34	-0.8
4,762,041	+		SO_4565	0.41	+0.0
4,762,041	+		SO_4565	0.41	+0.8
4,762,049	-		SO_4565	0.42	-2.1
4,762,176	-		SO_4565	0.52	-1.9
4,762,230	+		SO_4565	0.56	+1.7
4,762,274	+		SO_4565	0.59	-1.1
4,762,274	+		SO_4565	0.59	-2.0
4,762,274	+		SO_4565	0.59	+0.8
4,762,282	-		SO_4565	0.60	-2.5
4,762,282	-		SO_4565	0.60	+0.1
4,762,296	+		SO_4565	0.61	-0.5
4,762,312	-		SO_4565	0.62	-1.0
4,762,321	-		SO_4565	0.63	+1.0
4,762,409	-		SO_4565	0.70	-1.1
4,762,414	+		SO_4565	0.70	-1.8
4,762,589	-		SO_4565	0.84	-0.7
4,762,635	+		SO_4565	0.88	-0.7
4,762,706	+				+0.0
4,762,714	-				+0.6
4,762,714	-				-1.3
4,762,738	-				-0.9
4,762,810	-				+0.7
4,762,826	-				-0.6
4,762,888	-		SO4566	0.51	+4.4
4,762,931	+		SO4566	0.84	+1.0
4,762,956	-				+1.2
4,762,958	+				-1.6
4,762,966	-				-0.0
4,763,043	+				+0.5
4,763,051	-				-1.7
4,763,053	-				-0.5
4,763,053	-				-1.0
4,763,116	+		SO4567	0.22	-0.8
4,763,148	+		SO4567	0.30	-1.5
4,763,226	+		SO4567	0.48	-0.6
4,763,243	+		SO4567	0.52	-0.8
4,763,248	+		SO4567	0.53	+0.2
4,763,248	+		SO4567	0.53	+0.2
4,763,248	+		SO4567	0.53	+0.6
4,763,248	+		SO4567	0.53	-3.2
4,763,251	-		SO4567	0.53	+0.5
4,763,256	-		SO4567	0.55	-0.4
4,763,336	+		SO4567	0.73	+1.0
4,763,338	+		SO4567	0.74	+0.3
4,763,423	-				-0.2
4,763,485	+				+0.6
4,763,494	-				+0.5
4,763,496	+				+0.6
4,763,525	-				+0.8
4,763,588	+				+0.5
4,763,596	-				+0.9
4,763,598	+				-0.7
4,763,598	+				-0.4
4,763,598	+				-0.9
4,763,598	+				+0.2
4,763,606	-				-1.0
4,763,606	-				-0.9
4,763,606	-				-0.8
4,763,642	+				-1.7
4,763,642	+				+0.1
4,763,650	-				-0.3
4,763,650	-				-0.1
4,763,650	-				+0.2
4,763,764	+				-0.5
4,763,772	-				-2.9
4,763,801	-				-0.0
4,763,805	-				+0.5
4,763,832	+	nrfD-2	SO4568	0.12	-1.1
4,763,840	-	nrfD-2	SO4568	0.13	-1.8