Strain Fitness in Shewanella oneidensis MR-1 around SO4556

Experiment: C.elegans, mixed culture-2

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	C.elegans, mixed culture-2
4,751,403	-		SO4555	0.27	-0.8
4,751,403	-		SO4555	0.27	+0.4
4,751,410	-		SO4555	0.28	-0.8
4,751,443	+		SO4555	0.30	+0.3
4,751,451	-		SO4555	0.31	-0.1
4,751,603	-		SO4555	0.44	+0.8
4,751,812	-		SO4555	0.61	-0.2
4,751,848	-		SO4555	0.64	-0.0
4,751,849	-		SO4555	0.64	+0.3
4,751,892	+		SO4555	0.68	+1.2
4,751,947	+		SO4555	0.72	+0.4
4,751,947	+		SO4555	0.72	+1.5
4,752,011	-		SO4555	0.77	+1.0
4,752,045	+		SO4555	0.80	-0.0
4,752,092	-		SO4555	0.84	+1.0
4,752,116	-		SO4555	0.86	-0.2
4,752,168	-				-0.2
4,752,169	-				-0.6
4,752,217	-				+0.9
4,752,234	+				-0.2
4,752,243	-				+0.6
4,752,280	+				+0.6
4,752,288	-				-0.0
4,752,288	-				+0.5
4,752,288	-				+1.9
4,752,312	+				-0.2
4,752,312	+				+0.1
4,752,337	-				+0.2
4,752,474	-				-2.2
4,752,555	-		SO4556	0.16	+0.2
4,752,571	+		SO4556	0.18	+1.0
4,752,583	+		SO4556	0.19	-0.2
4,752,610	+		SO4556	0.22	-0.8
4,752,642	+		SO4556	0.25	-0.6
4,752,670	+		SO4556	0.28	-1.3
4,752,713	+		SO4556	0.33	-0.1
4,752,721	+		SO4556	0.33	-0.2
4,752,759	+		SO4556	0.37	-2.7
4,752,798	-		SO4556	0.41	+0.9
4,752,823	+		SO4556	0.44	-0.0
4,752,944	+		SO4556	0.56	+1.2
4,753,064	-		SO4556	0.69	+0.2
4,753,167	+		SO4556	0.80	-1.3
4,753,202	-		SO4556	0.83	-0.2
4,753,206	+		SO4556	0.84	-0.0
4,753,230	+		SO4556	0.86	+0.8
4,753,383	+				+0.8
4,753,400	+				+0.4
4,753,451	+				-0.4
4,753,473	+				-0.0
4,753,579	+				+0.2
4,753,687	-		SO4557	0.14	+1.7
4,753,688	-		SO4557	0.14	-1.1
4,753,738	-		SO4557	0.17	-1.0
4,753,762	-		SO4557	0.18	-0.8
4,753,912	+		SO4557	0.26	-0.9
4,753,912	+		SO4557	0.26	-0.1
4,753,920	-		SO4557	0.26	+0.3
4,753,920	-		SO4557	0.26	-1.4
4,753,992	+		SO4557	0.30	-1.6
4,754,071	-		SO4557	0.34	-2.6
4,754,097	-		SO4557	0.36	-0.6
4,754,158	-		SO4557	0.39	-1.2
4,754,198	-		SO4557	0.41	-1.4
4,754,215	+		SO4557	0.42	-2.3
4,754,292	+		SO4557	0.46	-1.6
4,754,323	+		SO4557	0.48	-1.1
4,754,327	-		SO4557	0.48	+1.6