Strain Fitness in Shewanella oneidensis MR-1 around SO4451

Experiment: C.elegans, mixed culture-2

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	C.elegans, mixed culture-2
4,638,589	+		SO4448	0.77	-0.0
4,638,595	+		SO4448	0.78	-0.3
4,638,603	-		SO4448	0.79	+0.5
4,638,630	+		SO4448	0.82	+0.3
4,638,734	+				-1.2
4,638,742	-				-0.7
4,638,742	-				-0.2
4,638,754	+				-1.4
4,638,804	+				+1.6
4,638,852	-	moaE	SO4449	0.11	-0.3
4,638,862	+	moaE	SO4449	0.13	-3.8
4,638,949	+	moaE	SO4449	0.32	-0.4
4,638,967	-	moaE	SO4449	0.35	-2.2
4,639,006	-	moaE	SO4449	0.44	+1.4
4,639,009	+	moaE	SO4449	0.44	-2.9
4,639,017	+	moaE	SO4449	0.46	-1.0
4,639,017	+	moaE	SO4449	0.46	-2.9
4,639,025	-	moaE	SO4449	0.48	-1.1
4,639,042	+	moaE	SO4449	0.51	-1.2
4,639,106	+	moaE	SO4449	0.65	-1.9
4,639,186	+	moaE	SO4449	0.82	-1.2
4,639,335	+	moaD	SO4450	0.26	-0.4
4,639,335	+	moaD	SO4450	0.26	-0.5
4,639,375	+	moaD	SO4450	0.42	-0.4
4,639,383	-	moaD	SO4450	0.45	-1.4
4,639,383	-	moaD	SO4450	0.45	-2.3
4,639,383	-	moaD	SO4450	0.45	-0.4
4,639,455	+	moaD	SO4450	0.73	-1.1
4,639,455	+	moaD	SO4450	0.73	-1.5
4,639,455	+	moaD	SO4450	0.73	-1.3
4,639,455	+	moaD	SO4450	0.73	+1.8
4,639,463	-	moaD	SO4450	0.77	-2.2
4,639,473	-	moaD	SO4450	0.81	-0.1
4,639,473	-	moaD	SO4450	0.81	-2.0
4,639,548	+				-1.0
4,639,548	+				+0.1
4,639,548	+				-1.2
4,639,548	+				+0.9
4,639,548	+				-0.1
4,639,548	+				-2.4
4,639,556	-				-1.2
4,639,556	-				+0.6
4,639,596	-	moaC	SO4451	0.11	-1.4
4,639,623	+	moaC	SO4451	0.17	+0.1
4,639,623	+	moaC	SO4451	0.17	-1.9
4,639,631	-	moaC	SO4451	0.19	-1.1
4,639,631	-	moaC	SO4451	0.19	-1.7
4,639,631	-	moaC	SO4451	0.19	-1.3
4,639,714	+	moaC	SO4451	0.36	-0.6
4,639,714	+	moaC	SO4451	0.36	-1.3
4,639,714	+	moaC	SO4451	0.36	-1.5
4,639,714	+	moaC	SO4451	0.36	-0.4
4,639,722	-	moaC	SO4451	0.38	-1.2
4,639,722	-	moaC	SO4451	0.38	-2.1
4,639,722	-	moaC	SO4451	0.38	+2.6
4,639,856	+	moaC	SO4451	0.66	-1.9
4,639,871	-	moaC	SO4451	0.69	+0.8
4,639,871	-	moaC	SO4451	0.69	-1.7
4,639,881	+	moaC	SO4451	0.71	-0.9
4,639,986	-				-1.9
4,640,011	-				-0.4
4,640,030	+				-0.1
4,640,038	-				-1.4
4,640,038	-				-2.1
4,640,056	-				-1.9
4,640,176	+				+1.0
4,640,260	-	moaA	SO4452	0.13	-2.9
4,640,277	+	moaA	SO4452	0.15	-0.9
4,640,417	-	moaA	SO4452	0.29	-1.9
4,640,431	+	moaA	SO4452	0.30	-0.8
4,640,443	+	moaA	SO4452	0.31	-1.5
4,640,443	+	moaA	SO4452	0.31	-0.1
4,640,451	-	moaA	SO4452	0.32	-1.6
4,640,451	-	moaA	SO4452	0.32	+0.9
4,640,451	-	moaA	SO4452	0.32	+0.4
4,640,468	+	moaA	SO4452	0.34	-0.2
4,640,476	-	moaA	SO4452	0.35	-0.2
4,640,480	+	moaA	SO4452	0.35	+0.8
4,640,488	-	moaA	SO4452	0.36	-0.9
4,640,488	-	moaA	SO4452	0.36	-0.5
4,640,577	+	moaA	SO4452	0.45	-0.0
4,640,614	+	moaA	SO4452	0.49	+0.3
4,640,639	-	moaA	SO4452	0.51	-1.9
4,640,678	-	moaA	SO4452	0.55	-1.3
4,640,747	-	moaA	SO4452	0.62	+0.4
4,640,747	-	moaA	SO4452	0.62	-1.5
4,640,760	+	moaA	SO4452	0.64	-0.5
4,640,778	-	moaA	SO4452	0.66	-1.0
4,640,778	-	moaA	SO4452	0.66	-0.0
4,640,783	-	moaA	SO4452	0.66	-0.7
4,640,811	+	moaA	SO4452	0.69	-0.1