Strain Fitness in Shewanella oneidensis MR-1 around SO4322

Experiment: C.elegans, mixed culture-2

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	C.elegans, mixed culture-2
4,508,291	+	aggA	SO4320	0.81	-0.4
4,508,304	-	aggA	SO4320	0.82	-1.5
4,508,353	+	aggA	SO4320	0.85	-1.6
4,508,374	-	aggA	SO4320	0.87	-2.7
4,508,439	+				+0.9
4,508,484	+				-2.3
4,508,508	-				-0.9
4,508,512	-				-1.1
4,508,517	+				-2.2
4,508,583	+				-0.9
4,508,591	-				+1.9
4,508,679	-		SO4321	0.20	+0.2
4,508,686	+		SO4321	0.21	-0.8
4,508,741	-		SO4321	0.30	-0.8
4,508,758	-		SO4321	0.33	-0.6
4,508,810	+		SO4321	0.42	-1.5
4,508,828	-		SO4321	0.45	-0.9
4,508,877	+		SO4321	0.53	-1.0
4,508,877	+		SO4321	0.53	-1.0
4,508,923	-		SO4321	0.60	+0.8
4,508,990	+		SO4321	0.71	-1.9
4,509,014	+		SO4321	0.75	-1.2
4,509,020	+		SO4321	0.76	-1.4
4,509,022	-		SO4321	0.77	-0.7
4,509,034	-		SO4321	0.79	+0.9
4,509,044	-		SO4321	0.80	-1.7
4,509,078	+		SO4321	0.86	-0.4
4,509,079	+		SO4321	0.86	-0.1
4,509,087	-		SO4321	0.87	-0.2
4,509,097	+		SO4321	0.89	-1.8
4,509,098	-		SO4321	0.89	-1.2
4,509,165	+				-2.6
4,509,262	-		SO4322	0.11	-0.7
4,509,264	+		SO4322	0.12	+0.6
4,509,344	+		SO4322	0.23	-1.5
4,509,363	+		SO4322	0.26	-2.5
4,509,481	+		SO4322	0.42	-0.4
4,509,489	-		SO4322	0.43	-2.3
4,509,489	-		SO4322	0.43	+2.1
4,509,558	-		SO4322	0.53	-1.7
4,509,562	+		SO4322	0.54	-0.1
4,509,637	+		SO4322	0.64	+0.4
4,509,766	-		SO4322	0.82	-1.9
4,509,836	+				-1.1
4,509,838	-				-1.9
4,509,843	+				+0.6
4,509,843	+				-0.4
4,509,843	+				-0.9
4,509,843	+				+0.0
4,509,844	-				-1.1
4,509,866	-				+0.4
4,509,866	-				-0.9
4,509,866	-				+0.1
4,509,896	+				-1.7
4,509,904	-				+0.7
4,509,939	+				-1.1
4,509,958	+				+0.6
4,509,959	+				-2.1
4,509,959	+				-1.8
4,509,966	-				-2.4
4,509,993	-				-2.0
4,510,018	+				-2.5
4,510,026	-				-1.0
4,510,026	-				-2.8
4,510,054	-				-1.6
4,510,098	-		SO4323	0.10	-2.4
4,510,265	+		SO4323	0.19	-1.9
4,510,274	+		SO4323	0.20	-0.5
4,510,502	-		SO4323	0.31	-1.7
4,510,761	-		SO4323	0.45	-1.1
4,510,886	-		SO4323	0.51	-3.0