Strain Fitness in Shewanella oneidensis MR-1 around SO4227

Experiment: C.elegans, mixed culture-2

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntftsI and ftsL are separated by 13 nucleotidesftsL and SO4227 are separated by 11 nucleotidesSO4227 and SO4228 are separated by 30 nucleotides SO4225: ftsI - peptidoglycan synthetase FtsI (NCBI ptt file), at 4,400,705 to 4,402,456 ftsI SO4226: ftsL - cell division protein FtsL (NCBI ptt file), at 4,402,470 to 4,402,784 ftsL SO4227: SO4227 - conserved hypothetical protein TIGR00006 (NCBI ptt file), at 4,402,796 to 4,403,737 SO4227 SO4228: SO4228 - conserved hypothetical protein TIGR00242 (NCBI ptt file), at 4,403,768 to 4,404,226 SO4228 Position (kb) 4402 4403 4404Strain fitness (log2 ratio) -1 0 1 2 3at 4402.828 kb on - strandat 4402.828 kb on - strandat 4402.948 kb on - strand, within SO4227at 4404.089 kb on - strand, within SO4228at 4404.089 kb on - strand, within SO4228at 4404.154 kb on - strand, within SO4228at 4404.243 kb on - strandat 4404.437 kb on + strandat 4404.437 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction C.elegans, mixed culture-2
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4,402,828 - -0.1
4,402,828 - -0.5
4,402,948 - SO4227 0.16 -0.8
4,404,089 - SO4228 0.70 +3.3
4,404,089 - SO4228 0.70 -1.2
4,404,154 - SO4228 0.84 +1.3
4,404,243 - +0.3
4,404,437 + -0.5
4,404,437 + -0.4

Or see this region's nucleotide sequence