Strain Fitness in Shewanella oneidensis MR-1 around SO4034

Experiment: C.elegans, mixed culture-2

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	C.elegans, mixed culture-2
4,188,590	-		SO4032	0.24	+1.4
4,188,719	+		SO4032	0.37	+0.3
4,188,727	-		SO4032	0.37	+1.8
4,188,827	+		SO4032	0.47	-0.7
4,188,828	+		SO4032	0.47	+0.8
4,188,910	+		SO4032	0.55	+0.2
4,188,940	-		SO4032	0.58	-0.6
4,188,959	-		SO4032	0.60	+2.0
4,189,058	-		SO4032	0.69	+0.4
4,189,136	+		SO4032	0.77	+0.5
4,189,160	-		SO4032	0.79	+0.8
4,189,160	-		SO4032	0.79	-1.5
4,189,172	-		SO4032	0.80	-1.7
4,189,191	+		SO4032	0.82	-0.5
4,189,232	+		SO4032	0.86	-0.6
4,189,232	-		SO4032	0.86	-0.9
4,189,279	+				+0.2
4,189,355	-				-0.7
4,189,691	-				-2.1
4,189,739	+				+0.1
4,189,752	+				-1.7
4,189,760	-				-0.0
4,189,914	+	deaD	SO4034	0.18	+0.2
4,190,103	+	deaD	SO4034	0.28	-1.6
4,190,393	+	deaD	SO4034	0.44	-0.0
4,190,401	-	deaD	SO4034	0.44	-0.7
4,190,518	-	deaD	SO4034	0.50	+0.2
4,190,678	-	deaD	SO4034	0.59	-0.4
4,190,697	+	deaD	SO4034	0.60	+0.2
4,190,848	+	deaD	SO4034	0.68	-1.8
4,190,923	+	deaD	SO4034	0.72	-2.6
4,190,934	+	deaD	SO4034	0.72	+1.8
4,191,014	-	deaD	SO4034	0.77	-1.5
4,191,083	+	deaD	SO4034	0.80	-1.6
4,191,091	-	deaD	SO4034	0.81	-0.0
4,191,217	+	deaD	SO4034	0.88	-1.3
4,191,217	+	deaD	SO4034	0.88	+0.4
4,191,320	+				-0.6
4,191,457	+				+0.4
4,191,463	+				+0.1
4,191,463	+				-1.4
4,191,463	+				-0.0
4,191,463	+				+0.3
4,191,606	+				-0.5
4,191,750	+		SO4035	0.32	-2.8
4,191,750	+		SO4035	0.32	+1.0
4,191,758	-		SO4035	0.34	+0.4
4,191,758	-		SO4035	0.34	+1.5
4,191,874	-		SO4035	0.66	-0.2
4,191,896	-		SO4035	0.72	+1.1
4,191,898	+		SO4035	0.73	-0.6
4,191,906	-		SO4035	0.75	+0.1
4,191,972	-				+1.2
4,192,107	+				+0.8
4,192,109	+				-0.5
4,192,318	+		SO4036	0.34	+1.1
4,192,430	-		SO4036	0.55	-0.7