Strain Fitness in Shewanella oneidensis MR-1 around SO4002

Experiment: C.elegans, mixed culture-2

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	C.elegans, mixed culture-2
4,138,016	-				-0.9
4,138,193	-		SO4001	0.29	-0.4
4,138,202	-		SO4001	0.31	-1.0
4,138,229	+		SO4001	0.35	+1.1
4,138,229	+		SO4001	0.35	+0.5
4,138,229	+		SO4001	0.35	-1.2
4,138,229	+		SO4001	0.35	-1.0
4,138,229	+		SO4001	0.35	+0.2
4,138,237	-		SO4001	0.36	-0.4
4,138,237	-		SO4001	0.36	+0.8
4,138,237	-		SO4001	0.36	-0.7
4,138,237	-		SO4001	0.36	-0.0
4,138,237	-		SO4001	0.36	-0.4
4,138,237	-		SO4001	0.36	-0.3
4,138,237	-		SO4001	0.36	-0.9
4,138,237	-		SO4001	0.36	-0.1
4,138,237	-		SO4001	0.36	-0.4
4,138,285	-		SO4001	0.43	-0.7
4,138,292	-		SO4001	0.44	-0.4
4,138,321	+		SO4001	0.48	+1.7
4,138,462	+		SO4001	0.68	+0.6
4,138,468	+		SO4001	0.69	+1.7
4,138,675	-				+0.9
4,138,713	+				-0.2
4,138,768	-				-2.6
4,138,811	-				-0.0
4,138,852	+				-1.2
4,138,860	-				-1.1
4,138,920	-				-3.8
4,138,969	+				+0.0
4,139,041	+				-0.8
4,139,053	-				-1.1
4,139,053	-				-2.0
4,139,162	-				-0.3
4,139,351	+		SO4002	0.13	-2.0
4,139,351	+		SO4002	0.13	-1.1
4,139,363	+		SO4002	0.13	-2.5
4,139,389	+		SO4002	0.14	-1.5
4,139,401	-		SO4002	0.14	-0.0
4,139,445	-		SO4002	0.15	-0.4
4,139,540	-		SO4002	0.17	-1.5
4,139,613	+		SO4002	0.18	-1.8
4,139,626	-		SO4002	0.19	-2.3
4,139,639	+		SO4002	0.19	-0.4
4,139,654	+		SO4002	0.19	+0.6
4,139,662	-		SO4002	0.19	-2.7
4,139,674	-		SO4002	0.20	-2.4
4,139,840	+		SO4002	0.23	+0.8
4,139,840	+		SO4002	0.23	-0.6
4,139,840	+		SO4002	0.23	-0.8
4,139,840	+		SO4002	0.23	-2.1
4,139,848	-		SO4002	0.23	-1.7
4,139,848	-		SO4002	0.23	-1.3
4,139,848	-		SO4002	0.23	-2.3
4,139,848	-		SO4002	0.23	+0.1
4,139,914	+		SO4002	0.24	+0.4
4,139,969	+		SO4002	0.25	-1.2
4,140,012	-		SO4002	0.26	-1.5
4,140,026	+		SO4002	0.26	-0.3
4,140,034	-		SO4002	0.27	-0.9
4,140,036	-		SO4002	0.27	+0.5
4,140,065	+		SO4002	0.27	-1.6
4,140,131	+		SO4002	0.29	-2.1
4,140,204	-		SO4002	0.30	-1.7
4,140,245	-		SO4002	0.31	-3.0
4,140,253	+		SO4002	0.31	-3.2
4,140,275	+		SO4002	0.31	-0.4
4,140,309	+		SO4002	0.32	-0.8
4,140,309	+		SO4002	0.32	-1.4
4,140,309	+		SO4002	0.32	-1.3
4,140,309	+		SO4002	0.32	-2.5
4,140,309	+		SO4002	0.32	-0.6
4,140,309	+		SO4002	0.32	-0.8
4,140,309	+		SO4002	0.32	-0.4
4,140,317	-		SO4002	0.32	-2.3
4,140,317	-		SO4002	0.32	-0.3
4,140,317	-		SO4002	0.32	-1.7
4,140,317	-		SO4002	0.32	-1.5
4,140,317	-		SO4002	0.32	-1.2
4,140,317	-		SO4002	0.32	-1.7
4,140,317	-		SO4002	0.32	-0.3
4,140,356	+		SO4002	0.33	-1.5
4,140,364	-		SO4002	0.33	-1.2
4,140,364	-		SO4002	0.33	-2.7
4,140,625	-		SO4002	0.38	-2.2
4,140,636	+		SO4002	0.39	-2.2
4,140,644	-		SO4002	0.39	-1.3
4,140,645	+		SO4002	0.39	-1.8
4,140,654	-		SO4002	0.39	-1.3
4,140,667	+		SO4002	0.39	-1.0
4,140,667	+		SO4002	0.39	-1.7
4,140,677	+		SO4002	0.39	-1.4
4,140,677	+		SO4002	0.39	+0.2
4,140,685	-		SO4002	0.39	-2.3
4,140,685	-		SO4002	0.39	-0.1
4,140,685	-		SO4002	0.39	-1.7
4,140,733	+		SO4002	0.40	-3.5
4,140,741	-		SO4002	0.41	-1.1
4,140,741	-		SO4002	0.41	-0.6
4,140,914	+		SO4002	0.44	-1.0
4,140,924	+		SO4002	0.44	-2.1
4,140,932	-		SO4002	0.44	-1.1
4,140,943	+		SO4002	0.45	-0.1
4,140,956	-		SO4002	0.45	-1.5
4,141,049	-		SO4002	0.47	-2.3
4,141,082	+		SO4002	0.47	-3.1
4,141,084	+		SO4002	0.47	-0.3
4,141,085	-		SO4002	0.47	-2.3
4,141,090	-		SO4002	0.47	-0.7
4,141,156	+		SO4002	0.49	-1.3
4,141,229	+		SO4002	0.50	-0.7
4,141,248	-		SO4002	0.51	+0.4
4,141,299	-		SO4002	0.52	-0.6
4,141,344	+		SO4002	0.52	-1.7
4,141,352	-		SO4002	0.53	-2.8
4,141,392	-		SO4002	0.53	-0.8
4,141,539	-		SO4002	0.56	-2.3
4,141,619	-		SO4002	0.58	-1.3
4,141,619	-		SO4002	0.58	-3.0
4,141,632	-		SO4002	0.58	-1.3
4,141,662	+		SO4002	0.59	-1.7
4,141,673	+		SO4002	0.59	-2.3
4,141,830	+		SO4002	0.62	-1.7
4,141,905	-		SO4002	0.64	-2.4
4,141,913	+		SO4002	0.64	+1.7
4,141,913	+		SO4002	0.64	-1.7
4,141,913	+		SO4002	0.64	-2.5
4,141,913	+		SO4002	0.64	-0.4
4,141,913	+		SO4002	0.64	-1.8
4,141,916	+		SO4002	0.64	-1.7
4,141,921	-		SO4002	0.64	-2.9
4,141,921	-		SO4002	0.64	-0.9
4,141,921	-		SO4002	0.64	-2.4
4,141,921	-		SO4002	0.64	-2.1
4,141,923	-		SO4002	0.64	-1.7
4,141,996	+		SO4002	0.65	-0.8
4,141,996	+		SO4002	0.65	-2.3
4,141,996	+		SO4002	0.65	-0.7
4,142,004	-		SO4002	0.66	-2.1
4,142,004	-		SO4002	0.66	-0.3
4,142,020	+		SO4002	0.66	-1.4
4,142,023	-		SO4002	0.66	-1.4
4,142,028	-		SO4002	0.66	-2.3
4,142,041	-		SO4002	0.66	-2.3
4,142,414	-		SO4002	0.74	-1.4
4,142,458	-		SO4002	0.74	-2.4
4,142,584	+		SO4002	0.77	-1.6
4,142,592	-		SO4002	0.77	-0.6
4,142,609	-		SO4002	0.77	-0.1
4,142,678	+		SO4002	0.79	-2.9
4,142,806	+		SO4002	0.81	-0.4
4,142,815	-		SO4002	0.81	+0.2
4,142,828	+		SO4002	0.82	-1.4
4,142,836	-		SO4002	0.82	-2.3
4,142,836	-		SO4002	0.82	-2.7
4,142,984	+		SO4002	0.85	-1.7
4,143,084	-		SO4002	0.87	-0.1
4,143,087	+		SO4002	0.87	-2.1
4,143,230	+		SO4002	0.90	-2.6
4,143,300	+				-1.3
4,143,308	-				-0.4
4,143,308	-				-3.3
4,143,308	-				-1.3
4,143,365	-				-2.7
4,143,456	-				-2.0
4,143,582	+				-2.8
4,143,644	-				-0.0
4,143,656	-				-1.2
4,143,679	+				-3.2
4,143,687	-				+0.3
4,143,695	+				-1.1
4,143,695	+				-1.3
4,143,695	+				-0.3
4,143,695	+				+0.2
4,143,703	-				-0.8
4,143,703	-				+0.0
4,143,703	-				-1.5
4,143,703	-				+0.5
4,143,738	+				-0.1
4,143,762	+				-1.9
4,143,762	+				-0.5
4,143,768	+				-0.7
4,143,781	-				+1.0
4,143,781	-				-2.5
4,144,070	-				-1.5
4,144,072	-				-2.1
4,144,074	+				-0.3
4,144,074	+				+0.6
4,144,111	-		SO4003	0.12	+0.0
4,144,164	-		SO4003	0.17	+0.3
4,144,257	+		SO4003	0.26	+0.5
4,144,274	+		SO4003	0.27	+0.1
4,144,338	+		SO4003	0.33	-0.9
4,144,368	+		SO4003	0.36	-0.6
4,144,376	-		SO4003	0.37	+0.5
4,144,376	-		SO4003	0.37	-1.6
4,144,417	-		SO4003	0.41	+1.2
4,144,426	+		SO4003	0.42	-0.7
4,144,426	+		SO4003	0.42	+0.2
4,144,434	-		SO4003	0.42	+0.9
4,144,434	-		SO4003	0.42	+0.3
4,144,481	+		SO4003	0.47	+0.3
4,144,497	+		SO4003	0.48	+0.4
4,144,510	-		SO4003	0.49	+0.0
4,144,616	+		SO4003	0.59	-1.3
4,144,624	-		SO4003	0.60	+0.5