Strain Fitness in Shewanella oneidensis MR-1 around SO3934
Experiment: C.elegans, mixed culture-2
Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.
Per-strain Table
Position | Strand | Gene | LocusTag | Fraction | C.elegans, mixed culture-2 |
---|---|---|---|---|---|
remove | |||||
4,078,108 | - | SO3933 | 0.58 | +1.0 | |
4,078,225 | + | SO3933 | 0.66 | +1.5 | |
4,078,231 | - | SO3933 | 0.66 | -1.1 | |
4,078,246 | + | SO3933 | 0.67 | -1.2 | |
4,078,254 | - | SO3933 | 0.68 | +0.4 | |
4,078,276 | + | SO3933 | 0.70 | -0.9 | |
4,078,276 | + | SO3933 | 0.70 | -1.7 | |
4,078,284 | - | SO3933 | 0.70 | -0.6 | |
4,078,369 | + | SO3933 | 0.76 | +0.3 | |
4,078,442 | - | SO3933 | 0.81 | +0.4 | |
4,078,484 | - | SO3933 | 0.84 | -0.0 | |
4,078,484 | - | SO3933 | 0.84 | +0.9 | |
4,078,811 | - | -1.5 | |||
4,078,870 | - | SO3934 | 0.12 | -0.8 | |
4,078,907 | + | SO3934 | 0.17 | -0.1 | |
4,078,907 | + | SO3934 | 0.17 | +0.8 | |
4,078,915 | - | SO3934 | 0.18 | -0.0 | |
4,078,915 | - | SO3934 | 0.18 | -2.4 | |
4,078,915 | - | SO3934 | 0.18 | -1.8 | |
4,078,915 | - | SO3934 | 0.18 | -2.1 | |
4,078,921 | - | SO3934 | 0.19 | -1.3 | |
4,079,124 | + | SO3934 | 0.46 | -0.9 | |
4,079,150 | - | SO3934 | 0.50 | -0.6 | |
4,079,150 | - | SO3934 | 0.50 | -2.2 | |
4,079,193 | - | SO3934 | 0.56 | +0.3 | |
4,079,200 | + | SO3934 | 0.57 | +1.2 | |
4,079,318 | - | SO3934 | 0.72 | -2.3 | |
4,079,325 | - | SO3934 | 0.73 | -1.4 | |
4,079,468 | - | -0.9 | |||
4,079,485 | - | -1.2 | |||
4,079,485 | - | -1.7 | |||
4,079,640 | + | -0.3 | |||
4,079,648 | - | +1.5 | |||
4,079,742 | + | -1.4 | |||
4,079,750 | - | -0.4 | |||
4,079,800 | + | vacB | SO3935 | 0.11 | -1.6 |
4,079,804 | - | vacB | SO3935 | 0.12 | +2.0 |
4,079,808 | - | vacB | SO3935 | 0.12 | -1.5 |
4,079,829 | - | vacB | SO3935 | 0.13 | +0.2 |
4,079,829 | - | vacB | SO3935 | 0.13 | +1.0 |
4,079,928 | - | vacB | SO3935 | 0.17 | -2.1 |
4,079,928 | - | vacB | SO3935 | 0.17 | +1.0 |
4,080,081 | + | vacB | SO3935 | 0.23 | -1.6 |
4,080,180 | + | vacB | SO3935 | 0.27 | -0.9 |
4,080,430 | + | vacB | SO3935 | 0.37 | -2.1 |
4,080,430 | + | vacB | SO3935 | 0.37 | -0.4 |
4,080,438 | - | vacB | SO3935 | 0.38 | +0.6 |
4,080,438 | - | vacB | SO3935 | 0.38 | -1.1 |
4,080,516 | + | vacB | SO3935 | 0.41 | +0.4 |
Or see this region's nucleotide sequence