Strain Fitness in Shewanella oneidensis MR-1 around SO3728

Experiment: C.elegans, mixed culture-2

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	C.elegans, mixed culture-2
3,870,974	+	cysD	SO3727	0.17	+1.3
3,870,974	+	cysD	SO3727	0.17	+0.4
3,870,982	-	cysD	SO3727	0.18	+0.5
3,871,082	-	cysD	SO3727	0.29	-0.3
3,871,228	-	cysD	SO3727	0.45	-0.1
3,871,306	-	cysD	SO3727	0.54	-0.3
3,871,364	+	cysD	SO3727	0.60	-0.0
3,871,404	-	cysD	SO3727	0.65	-0.7
3,871,404	-	cysD	SO3727	0.65	+1.1
3,871,404	-	cysD	SO3727	0.65	-0.4
3,871,428	-	cysD	SO3727	0.67	-0.9
3,871,505	+	cysD	SO3727	0.76	-1.2
3,871,719	+				-1.0
3,871,719	+				+0.3
3,871,719	+				-0.2
3,871,719	+				-1.2
3,871,727	-				+1.0
3,871,727	-				+1.2
3,871,740	-				-0.8
3,871,757	-				-1.0
3,871,767	-				+0.8
3,871,791	-				+0.2
3,871,829	+				-0.2
3,871,847	-				-0.9
3,871,870	-				+1.7
3,871,897	+	cobA	SO3728	0.11	-0.8
3,871,949	+	cobA	SO3728	0.17	-1.4
3,872,064	-	cobA	SO3728	0.31	-0.2
3,872,126	+	cobA	SO3728	0.39	-0.2
3,872,134	-	cobA	SO3728	0.40	-0.6
3,872,176	+	cobA	SO3728	0.45	-1.8
3,872,305	-	cobA	SO3728	0.60	+0.2
3,872,511	-	cobA	SO3728	0.85	-0.6
3,872,586	+				+0.8
3,872,590	+				+0.2
3,872,659	-				-0.9
3,872,738	+				-1.4
3,872,746	-				-0.8
3,872,764	+				-0.3
3,872,864	+				+0.2
3,872,872	-				+0.4
3,873,046	+				+0.4
3,873,046	+				+0.8
3,873,112	+		SO3729	0.34	-1.8
3,873,112	+		SO3729	0.34	-0.0
3,873,120	-		SO3729	0.39	+1.3
3,873,122	-		SO3729	0.41	+0.4
3,873,179	+		SO3729	0.79	-2.0
3,873,203	-				+1.6
3,873,224	+				-0.2
3,873,224	+				+1.1
3,873,248	+				-0.4
3,873,253	+				-0.6
3,873,261	-				+0.4
3,873,261	-				-2.1
3,873,261	-				+0.8
3,873,405	-				-1.2
3,873,448	+		SO_3730	0.14	-0.7
3,873,523	+		SO_3730	0.25	-0.8
3,873,531	-		SO_3730	0.27	-0.2
3,873,599	-		SO_3730	0.37	-0.3
3,873,599	-		SO_3730	0.37	-1.0