Strain Fitness in Shewanella oneidensis MR-1 around SO3641

Experiment: C.elegans, mixed culture-2

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	C.elegans, mixed culture-2
3,799,193	-	ksgA	SO3639	0.67	+2.8
3,799,236	+	ksgA	SO3639	0.73	+2.8
3,799,290	-	ksgA	SO3639	0.79	+2.8
3,799,290	-	ksgA	SO3639	0.79	+2.8
3,799,458	-				-0.0
3,799,458	-				+2.3
3,799,528	-				-0.0
3,799,528	-				+0.4
3,799,695	+	apaG	SO3640	0.49	+0.4
3,799,702	-	apaG	SO3640	0.51	+1.4
3,799,710	-	apaG	SO3640	0.53	+0.2
3,799,935	+				-1.6
3,799,935	+				-0.4
3,799,943	-				-0.8
3,799,943	-				-1.2
3,799,943	-				-0.8
3,800,067	-	apaH	SO3641	0.19	+0.9
3,800,212	+	apaH	SO3641	0.36	-0.2
3,800,212	+	apaH	SO3641	0.36	-1.2
3,800,220	-	apaH	SO3641	0.37	-0.4
3,800,386	+	apaH	SO3641	0.58	-0.0
3,800,389	+	apaH	SO3641	0.58	+1.6
3,800,406	-	apaH	SO3641	0.60	-1.4
3,800,418	+	apaH	SO3641	0.61	-2.1
3,800,418	+	apaH	SO3641	0.61	-1.3
3,800,418	+	apaH	SO3641	0.61	-1.2
3,800,418	+	apaH	SO3641	0.61	+0.2
3,800,426	-	apaH	SO3641	0.62	-1.1
3,800,426	-	apaH	SO3641	0.62	+0.2
3,800,426	-	apaH	SO3641	0.62	-1.4
3,800,517	-	apaH	SO3641	0.73	+0.4
3,800,837	+				+0.3
3,800,868	+				+0.4
3,800,917	-				+0.9
3,800,917	-				+0.4
3,800,917	-				-0.4
3,800,964	-				+1.0
3,800,983	-				+1.0
3,801,016	+				+0.0
3,801,137	-		SO3642	0.15	-1.7
3,801,170	+		SO3642	0.17	+0.0
3,801,241	+		SO3642	0.20	-0.8
3,801,316	-		SO3642	0.24	-0.2
3,801,316	-		SO3642	0.24	+2.2
3,801,365	+		SO3642	0.26	+0.2
3,801,403	+		SO3642	0.28	-0.7
3,801,557	+		SO3642	0.36	+1.8
3,801,557	+		SO3642	0.36	-1.2
3,801,557	+		SO3642	0.36	-0.1
3,801,565	-		SO3642	0.36	+2.4
3,801,565	-		SO3642	0.36	-0.7
3,801,565	-		SO3642	0.36	+0.8
3,801,607	+		SO3642	0.38	+0.1
3,801,616	-		SO3642	0.39	+0.1