Strain Fitness in Shewanella oneidensis MR-1 around SO3599

Experiment: C.elegans, mixed culture-2

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	C.elegans, mixed culture-2
3,760,086	-	cysM	SO3598	0.14	+0.5
3,760,120	+	cysM	SO3598	0.18	-0.6
3,760,128	-	cysM	SO3598	0.19	-1.5
3,760,135	-	cysM	SO3598	0.20	-0.1
3,760,153	-	cysM	SO3598	0.22	-1.0
3,760,300	+	cysM	SO3598	0.39	-0.3
3,760,433	+	cysM	SO3598	0.54	+0.2
3,760,481	+	cysM	SO3598	0.60	-1.2
3,760,489	-	cysM	SO3598	0.61	+0.2
3,760,489	-	cysM	SO3598	0.61	+2.1
3,760,489	-	cysM	SO3598	0.61	-1.0
3,760,522	-	cysM	SO3598	0.65	+1.2
3,760,522	-	cysM	SO3598	0.65	+0.8
3,760,583	+	cysM	SO3598	0.72	-0.2
3,760,703	+	cysM	SO3598	0.86	-0.5
3,760,735	-	cysM	SO3598	0.89	+0.1
3,760,768	-				-0.1
3,760,835	+				+1.7
3,760,839	-				-0.2
3,760,842	+				-1.5
3,761,009	+				-2.7
3,761,009	+				-1.0
3,761,009	+				+1.0
3,761,017	-				-0.3
3,761,017	-				+0.2
3,761,051	-				+0.3
3,761,086	+				-1.0
3,761,132	+				+0.4
3,761,132	+				+1.5
3,761,140	-				-0.3
3,761,275	-	cysP	SO3599	0.21	+3.0
3,761,275	-	cysP	SO3599	0.21	+0.1
3,761,298	-	cysP	SO3599	0.24	+1.0
3,761,298	-	cysP	SO3599	0.24	+2.1
3,761,321	-	cysP	SO3599	0.26	-2.3
3,761,321	-	cysP	SO3599	0.26	-0.0
3,761,322	-	cysP	SO3599	0.26	+0.1
3,761,448	-	cysP	SO3599	0.38	+0.4
3,761,538	-	cysP	SO3599	0.47	-2.2
3,761,638	+	cysP	SO3599	0.57	-0.1
3,761,646	-	cysP	SO3599	0.58	-0.5
3,761,835	+	cysP	SO3599	0.77	+1.1
3,761,835	-	cysP	SO3599	0.77	+0.6
3,761,904	+	cysP	SO3599	0.84	-0.8
3,761,904	+	cysP	SO3599	0.84	-0.9
3,761,964	+	cysP	SO3599	0.90	+0.4
3,761,974	+				-0.5
3,762,044	-				-0.0
3,762,274	+				-0.6
3,762,295	+				+0.2
3,762,298	-				-0.8
3,762,301	+				-0.3
3,762,309	-				-1.2
3,762,309	-				-1.7
3,762,357	-	cysT-1	SO3600	0.13	+2.6
3,762,385	+	cysT-1	SO3600	0.17	+0.1
3,762,385	+	cysT-1	SO3600	0.17	-0.3
3,762,385	+	cysT-1	SO3600	0.17	-0.4
3,762,405	-	cysT-1	SO3600	0.19	+1.3
3,762,507	-	cysT-1	SO3600	0.31	+0.5
3,762,563	-	cysT-1	SO3600	0.38	-1.1
3,762,588	+	cysT-1	SO3600	0.41	+0.4
3,762,588	+	cysT-1	SO3600	0.41	-0.7
3,762,760	+	cysT-1	SO3600	0.61	-0.2
3,762,774	+	cysT-1	SO3600	0.63	+0.5
3,762,840	+	cysT-1	SO3600	0.71	-0.8
3,762,840	+	cysT-1	SO3600	0.71	+0.7
3,762,840	+	cysT-1	SO3600	0.71	+0.5
3,762,841	+	cysT-1	SO3600	0.71	-1.2
3,762,849	-	cysT-1	SO3600	0.72	+0.5
3,762,885	-	cysT-1	SO3600	0.76	-0.3
3,763,016	-				-0.7
3,763,039	+				-1.0
3,763,040	+				+0.5
3,763,046	+				+0.2