Strain Fitness in Shewanella oneidensis MR-1 around SO3593

Experiment: C.elegans, mixed culture-2

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	C.elegans, mixed culture-2
3,755,332	+				-0.8
3,755,332	+				-1.2
3,755,379	+				-0.1
3,755,390	+				+0.6
3,755,390	+				+1.2
3,755,390	+				+0.3
3,755,398	-				+0.6
3,755,398	-				+1.8
3,755,409	+				-1.9
3,755,432	-				+1.8
3,755,451	-				+0.9
3,755,532	+		SO3592	0.19	+1.8
3,755,546	-		SO3592	0.20	+2.0
3,755,649	+		SO3592	0.31	+1.0
3,755,649	+		SO3592	0.31	-0.5
3,755,649	+		SO3592	0.31	-1.1
3,755,657	-		SO3592	0.32	+2.3
3,755,657	-		SO3592	0.32	+1.3
3,755,657	-		SO3592	0.32	+1.2
3,755,657	-		SO3592	0.32	-0.1
3,755,659	-		SO3592	0.33	+0.9
3,755,706	-		SO3592	0.38	-0.0
3,755,716	-		SO3592	0.39	+1.5
3,755,763	+		SO3592	0.44	+3.0
3,755,773	+		SO3592	0.45	+1.3
3,755,773	+		SO3592	0.45	+1.3
3,755,773	+		SO3592	0.45	+2.5
3,755,773	+		SO3592	0.45	+3.0
3,755,773	+		SO3592	0.45	+2.4
3,755,781	-		SO3592	0.46	-1.2
3,755,781	-		SO3592	0.46	+0.5
3,755,781	-		SO3592	0.46	+1.0
3,755,781	-		SO3592	0.46	+4.1
3,755,781	-		SO3592	0.46	+1.9
3,755,781	-		SO3592	0.46	-0.1
3,755,781	-		SO3592	0.46	-0.0
3,755,797	-		SO3592	0.48	+0.8
3,755,813	+		SO3592	0.49	+3.9
3,755,823	+		SO3592	0.50	+1.9
3,755,833	+		SO3592	0.52	+2.8
3,755,841	-		SO3592	0.52	+0.9
3,755,841	-		SO3592	0.52	+1.8
3,755,841	-		SO3592	0.52	-0.7
3,755,905	+		SO3592	0.59	+2.8
3,755,908	-		SO3592	0.60	-0.1
3,755,910	+		SO3592	0.60	+3.0
3,755,917	+		SO3592	0.61	+3.4
3,755,918	-		SO3592	0.61	+0.9
3,755,918	-		SO3592	0.61	+0.2
3,755,927	+		SO3592	0.62	+3.5
3,755,934	-		SO3592	0.63	+0.0
3,755,987	-		SO3592	0.68	-0.6
3,755,994	+		SO3592	0.69	+3.8
3,756,110	-		SO3592	0.82	+0.5
3,756,143	+		SO3592	0.85	-0.2
3,756,261	+				+1.2
3,756,261	+				+0.7
3,756,269	+				-0.9
3,756,269	-				+0.2
3,756,280	+				-0.6
3,756,285	+				+1.1
3,756,285	+				-2.7
3,756,305	+				-0.5
3,756,323	+				+0.3
3,756,324	+				-0.2
3,756,324	-				+1.1
3,756,330	+				-2.1
3,756,331	-				+1.1
3,756,332	-				-0.8
3,756,402	+		SO3593	0.24	+0.5
3,756,408	-		SO3593	0.25	+0.2
3,756,476	+		SO3593	0.43	-1.9
3,756,507	-		SO3593	0.51	-2.8
3,756,552	+		SO3593	0.63	-0.5
3,756,589	-		SO3593	0.72	-2.1
3,756,658	+				-0.8
3,756,658	+				-0.7
3,756,666	-				-0.5
3,756,670	+				+0.8
3,756,676	+				-0.5
3,756,721	+				-0.3
3,756,820	+		SO3594	0.18	+0.4
3,756,820	+		SO3594	0.18	-0.3
3,756,820	+		SO3594	0.18	+0.2
3,756,820	+		SO3594	0.18	+0.9
3,756,820	+		SO3594	0.18	-0.4
3,756,828	-		SO3594	0.19	-1.7
3,756,828	-		SO3594	0.19	-0.0
3,756,828	-		SO3594	0.19	-0.7
3,756,828	-		SO3594	0.19	+1.0
3,756,828	-		SO3594	0.19	-1.9
3,756,848	-		SO3594	0.22	-0.2
3,756,881	+		SO3594	0.26	+0.9
3,756,881	+		SO3594	0.26	+0.6
3,756,890	+		SO3594	0.27	-0.4
3,756,890	+		SO3594	0.27	+0.8
3,756,890	+		SO3594	0.27	-0.7
3,756,890	+		SO3594	0.27	+0.1
3,756,898	-		SO3594	0.29	+0.6
3,756,898	-		SO3594	0.29	+0.2
3,756,898	-		SO3594	0.29	-1.2
3,756,898	-		SO3594	0.29	+0.3
3,756,898	-		SO3594	0.29	+0.6
3,756,937	-		SO3594	0.34	-2.1
3,756,937	-		SO3594	0.34	-1.3
3,756,937	-		SO3594	0.34	-1.6
3,756,945	-		SO3594	0.35	-0.1
3,756,947	-		SO3594	0.35	+0.2
3,757,008	+		SO3594	0.44	-0.7
3,757,022	+		SO3594	0.46	-0.0
3,757,099	-		SO3594	0.57	-0.7
3,757,113	+		SO3594	0.59	-3.2
3,757,113	+		SO3594	0.59	+1.5
3,757,113	+		SO3594	0.59	-0.8
3,757,113	+		SO3594	0.59	+0.2
3,757,121	-		SO3594	0.60	-1.1
3,757,216	+		SO3594	0.73	+0.4
3,757,222	+		SO3594	0.74	-0.2
3,757,301	+		SO3594	0.85	-1.8
3,757,301	+		SO3594	0.85	+0.0
3,757,411	-				+0.8
3,757,480	-				-0.0