Strain Fitness in Shewanella oneidensis MR-1 around SO3555

Experiment: C.elegans, mixed culture-2

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	C.elegans, mixed culture-2
3,712,147	+				-0.7
3,712,262	+				-0.0
3,712,262	+				+0.1
3,712,314	+				-1.5
3,712,339	-				-2.5
3,712,353	+				-1.7
3,712,370	-				-2.9
3,712,378	+				+1.1
3,712,461	+				-1.3
3,712,535	-	purE	SO3554	0.19	-1.4
3,712,537	+	purE	SO3554	0.20	-3.3
3,712,629	+	purE	SO3554	0.38	+0.2
3,712,637	-	purE	SO3554	0.40	-1.4
3,712,647	+	purE	SO3554	0.42	-2.8
3,712,709	-	purE	SO3554	0.55	-2.8
3,712,986	+				-2.0
3,712,989	-				-3.3
3,712,991	+				-1.5
3,712,991	+				-0.9
3,712,999	-				-2.2
3,712,999	-				-2.0
3,713,137	+	purK	SO3555	0.19	-0.9
3,713,137	+	purK	SO3555	0.19	-0.7
3,713,145	-	purK	SO3555	0.19	-1.3
3,713,171	+	purK	SO3555	0.22	-2.6
3,713,227	+	purK	SO3555	0.27	-0.4
3,713,229	-	purK	SO3555	0.27	-1.1
3,713,277	-	purK	SO3555	0.32	-2.1
3,713,342	+	purK	SO3555	0.37	-1.5
3,713,350	-	purK	SO3555	0.38	-1.5
3,713,352	+	purK	SO3555	0.38	-2.3
3,713,469	+	purK	SO3555	0.49	-2.4
3,713,501	-	purK	SO3555	0.52	-1.9
3,713,584	+	purK	SO3555	0.59	-0.4
3,713,752	+	purK	SO3555	0.75	-0.4
3,713,785	-	purK	SO3555	0.78	-1.8
3,713,843	-	purK	SO3555	0.83	-3.0
3,713,848	-	purK	SO3555	0.84	-1.3
3,713,850	+	purK	SO3555	0.84	-1.4
3,713,933	+				-1.0
3,714,062	+				-1.7
3,714,063	-				-1.2
3,714,101	-				-1.1
3,714,104	+				+0.2
3,714,122	-				+0.5
3,714,297	+				-1.7
3,714,414	-		SO3556	0.19	+0.1
3,714,417	+		SO3556	0.19	-0.3
3,714,511	-		SO3556	0.26	+0.0
3,714,517	+		SO3556	0.27	-0.5
3,714,621	+		SO3556	0.35	-0.9
3,714,676	-		SO3556	0.40	-2.4
3,714,758	-		SO3556	0.46	-1.2
3,714,789	-		SO3556	0.48	-0.5
3,714,791	+		SO3556	0.49	+1.2
3,714,791	+		SO3556	0.49	+0.7
3,714,874	+		SO3556	0.55	+0.3
3,714,900	+		SO3556	0.57	-1.2