Strain Fitness in Shewanella oneidensis MR-1 around SO3527

Experiment: C.elegans, mixed culture-2

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	C.elegans, mixed culture-2
3,681,159	+		SO3525	0.85	+0.2
3,681,159	+		SO3525	0.85	-1.2
3,681,159	+		SO3525	0.85	+0.1
3,681,159	+		SO3525	0.85	+0.3
3,681,159	+		SO3525	0.85	+0.8
3,681,167	-		SO3525	0.85	+1.2
3,681,167	-		SO3525	0.85	+2.4
3,681,167	-		SO3525	0.85	-1.1
3,681,167	-		SO3525	0.85	+1.2
3,681,167	-		SO3525	0.85	+0.8
3,681,167	-		SO3525	0.85	+0.1
3,681,167	-		SO3525	0.85	-0.6
3,681,172	-		SO3525	0.86	-1.1
3,681,179	+		SO3525	0.86	+1.1
3,681,179	+		SO3525	0.86	-1.5
3,681,205	+		SO3525	0.86	+0.3
3,681,205	+		SO3525	0.86	+0.2
3,681,231	-		SO3525	0.87	-0.6
3,681,231	-		SO3525	0.87	-0.5
3,681,231	-		SO3525	0.87	-0.1
3,681,231	-		SO3525	0.87	-0.0
3,681,231	-		SO3525	0.87	+0.5
3,681,231	-		SO3525	0.87	+1.6
3,681,326	-		SO3525	0.90	+0.3
3,681,326	-		SO3525	0.90	+0.6
3,681,423	+				+0.0
3,681,423	+				-0.4
3,681,451	-				-0.9
3,681,467	-				-1.8
3,681,561	-				-0.5
3,681,707	+				-1.5
3,681,707	+				-0.4
3,681,707	+				-0.0
3,681,715	-				-0.6
3,681,723	+				-1.5
3,681,723	+				-2.7
3,681,726	-				-2.1
3,681,741	-		SO3526	0.13	-1.5
3,681,741	-		SO3526	0.13	+0.7
3,681,789	-		SO3526	0.23	-0.7
3,681,806	+		SO3526	0.27	+1.1
3,681,806	+		SO3526	0.27	+1.2
3,681,889	+		SO3526	0.45	-1.9
3,681,889	+		SO3526	0.45	-0.2
3,681,889	+		SO3526	0.45	+0.9
3,681,897	-		SO3526	0.46	+1.1
3,681,935	+		SO3526	0.55	+0.8
3,681,935	+		SO3526	0.55	-0.1
3,681,935	+		SO3526	0.55	-0.2
3,681,935	+		SO3526	0.55	-0.5
3,681,943	-		SO3526	0.56	+1.4
3,682,002	-		SO3526	0.69	-0.1
3,682,045	-		SO3526	0.78	-1.2
3,682,078	+		SO3526	0.85	-1.5
3,682,084	-		SO3526	0.87	+1.6
3,682,099	+				-0.5
3,682,146	+				-1.1
3,682,232	-				-0.7
3,682,262	+		SO3527	0.11	-0.2
3,682,287	-		SO3527	0.14	+0.7
3,682,357	+		SO3527	0.21	-0.1
3,682,365	-		SO3527	0.22	+0.7
3,682,371	+		SO3527	0.23	-0.2
3,682,383	+		SO3527	0.24	+0.8
3,682,391	-		SO3527	0.25	-0.1
3,682,391	-		SO3527	0.25	-0.6
3,682,515	-		SO3527	0.38	-0.0
3,682,515	-		SO3527	0.38	-0.1
3,682,699	-		SO3527	0.58	+2.4
3,682,718	+		SO3527	0.60	+1.5
3,682,736	-		SO3527	0.62	-0.2
3,682,754	+		SO3527	0.64	+0.6
3,682,805	-		SO3527	0.69	+1.5
3,682,822	+		SO3527	0.71	+0.2
3,682,928	+		SO3527	0.82	+0.1
3,682,956	-		SO3527	0.85	+0.3
3,683,037	+				-0.5
3,683,239	-		SO3528	0.20	+0.1
3,683,354	-		SO3528	0.40	-0.4
3,683,392	-		SO3528	0.47	-1.2
3,683,412	-		SO3528	0.50	-0.0
3,683,527	+		SO3528	0.71	+0.2
3,683,534	-		SO3528	0.72	-0.4
3,683,578	-		SO3528	0.80	-1.0
3,683,634	+		SO3528	0.90	+0.6
3,683,653	+				+0.1
3,683,666	+				-1.3
3,683,823	-				-0.6