Strain Fitness in Shewanella oneidensis MR-1 around SO3485

Experiment: C.elegans, mixed culture-2

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	C.elegans, mixed culture-2
3,633,454	-		SO3484	0.77	+2.3
3,633,467	-		SO3484	0.77	+0.4
3,633,469	+		SO3484	0.78	-1.7
3,633,487	+		SO3484	0.78	+2.0
3,633,487	+		SO3484	0.78	+0.3
3,633,495	-		SO3484	0.78	+0.2
3,633,495	-		SO3484	0.78	-1.4
3,633,665	+		SO3484	0.84	-0.3
3,633,720	+		SO3484	0.86	+0.5
3,633,744	+		SO3484	0.86	+1.0
3,633,754	-		SO3484	0.87	+0.1
3,633,844	+		SO3484	0.89	+1.0
3,633,857	-		SO3484	0.90	+0.0
3,633,990	+				+1.1
3,634,016	+				+0.1
3,634,016	+				+0.1
3,634,057	-				+0.2
3,634,129	+				-0.7
3,634,310	+				+0.5
3,634,310	+				+0.8
3,634,310	+				-1.1
3,634,315	+				+1.2
3,634,318	-				+1.1
3,634,369	+				-0.4
3,634,369	+				-2.1
3,634,447	+		SO3485	0.15	+0.3
3,634,455	-		SO3485	0.16	+0.8
3,634,470	-		SO3485	0.17	-0.7
3,634,483	+		SO3485	0.18	-0.6
3,634,597	+		SO3485	0.28	-0.0
3,634,619	-		SO3485	0.30	-2.1
3,634,619	-		SO3485	0.30	-0.4
3,634,619	-		SO3485	0.30	+0.4
3,634,721	-		SO3485	0.39	-2.4
3,634,728	-		SO3485	0.39	-0.8
3,634,856	+		SO3485	0.50	-1.0
3,634,896	-		SO3485	0.54	+0.0
3,634,952	-		SO3485	0.59	-1.3
3,635,009	-		SO3485	0.64	-1.0
3,635,095	+		SO3485	0.71	-1.4
3,635,103	-		SO3485	0.72	-3.1
3,635,199	-		SO3485	0.80	-1.6
3,635,218	-		SO3485	0.82	+0.5
3,635,350	+				-0.2
3,635,351	-				-0.7
3,635,351	-				+2.0
3,635,401	+				+0.9
3,635,766	+				+0.3
3,635,782	+				+0.8
3,635,782	+				+0.8
3,635,785	-				-0.5
3,635,790	-				+0.6
3,635,887	+				-0.2
3,635,892	+				-1.6
3,635,898	-				+0.3
3,635,970	-		SO3488	0.16	+0.3
3,636,105	+		SO3488	0.33	+0.5
3,636,110	+		SO3488	0.34	-0.2
3,636,196	+		SO3488	0.45	-2.0
3,636,204	-		SO3488	0.46	-0.1
3,636,219	+		SO3488	0.48	-0.9
3,636,242	-		SO3488	0.51	+1.3
3,636,335	+		SO3488	0.63	+0.7