Strain Fitness in Shewanella oneidensis MR-1 around SO3483

Experiment: C.elegans, mixed culture-2

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	C.elegans, mixed culture-2
3,628,941	-				-0.9
3,628,955	-				-0.9
3,628,966	-				+0.7
3,629,168	-		SO3481	0.30	-2.0
3,629,168	-		SO3481	0.30	+0.6
3,629,168	-		SO3481	0.30	-0.5
3,629,231	+		SO3481	0.38	+0.1
3,629,239	-		SO3481	0.39	-1.7
3,629,239	-		SO3481	0.39	-1.4
3,629,249	-		SO3481	0.40	-0.3
3,629,257	-		SO3481	0.41	+0.0
3,629,317	-		SO3481	0.49	+0.5
3,629,318	-		SO3481	0.49	+0.6
3,629,318	-		SO3481	0.49	-0.9
3,629,346	+		SO3481	0.52	+0.3
3,629,381	+		SO3481	0.57	-1.6
3,629,381	+		SO3481	0.57	+0.0
3,629,389	-		SO3481	0.58	+0.6
3,629,389	-		SO3481	0.58	-0.8
3,629,391	+		SO3481	0.58	-2.5
3,629,682	-				+0.2
3,629,689	-				+0.4
3,629,712	+				-0.9
3,629,843	-				-0.5
3,629,889	+				+0.2
3,629,897	-				-0.8
3,629,972	+				+2.5
3,630,008	+				+0.8
3,630,009	-				+0.9
3,630,015	-				-1.0
3,630,016	-				+0.5
3,630,371	+		SO3483	0.40	+0.6
3,630,379	-		SO3483	0.41	+1.2
3,630,402	+		SO3483	0.43	-1.6
3,630,571	-		SO3483	0.58	-0.7
3,630,662	-		SO3483	0.66	+0.1
3,630,765	-		SO3483	0.76	-1.6
3,630,825	+		SO3483	0.81	+1.5
3,630,880	+		SO3483	0.86	+2.0
3,630,891	+		SO3483	0.87	+0.0
3,630,891	+		SO3483	0.87	-0.3
3,630,891	+		SO3483	0.87	+0.4
3,630,925	-				-0.3
3,630,925	-				+1.0
3,631,007	+				+1.7
3,631,009	+				+0.9
3,631,009	+				-0.9
3,631,165	-				+1.1
3,631,251	+				+1.2
3,631,272	+				+0.8
3,631,344	+				-0.3
3,631,349	+		SO3484	0.10	+1.8
3,631,406	+		SO3484	0.12	+0.5
3,631,414	-		SO3484	0.12	+0.2
3,631,481	+		SO3484	0.14	+0.8
3,631,541	-		SO3484	0.16	-0.2
3,631,588	+		SO3484	0.18	+0.7
3,631,601	-		SO3484	0.18	+0.6
3,631,705	-		SO3484	0.21	+1.4
3,631,721	+		SO3484	0.22	-0.5
3,631,721	+		SO3484	0.22	+0.4
3,631,739	-		SO3484	0.22	+0.1
3,631,739	-		SO3484	0.22	-0.5
3,631,877	+		SO3484	0.27	-1.3
3,631,877	+		SO3484	0.27	-1.6
3,631,877	+		SO3484	0.27	-0.1
3,631,877	+		SO3484	0.27	+0.3
3,631,877	+		SO3484	0.27	-2.6
3,631,877	+		SO3484	0.27	+0.4
3,631,877	+		SO3484	0.27	-0.3
3,631,877	+		SO3484	0.27	+2.6
3,631,885	-		SO3484	0.27	-0.2
3,631,885	-		SO3484	0.27	+1.7
3,631,885	-		SO3484	0.27	+1.6
3,631,908	+		SO3484	0.28	-0.6