Strain Fitness in Shewanella oneidensis MR-1 around SO3407

Experiment: C.elegans, mixed culture-2

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	C.elegans, mixed culture-2
3,543,870	+				+0.6
3,543,956	-				+0.5
3,544,091	+				-1.5
3,544,091	+				-0.6
3,544,091	-				-0.5
3,544,099	-				+1.6
3,544,099	-				+1.1
3,544,192	+				-0.5
3,544,241	+				-0.2
3,544,251	+				-0.5
3,544,652	-				+1.5
3,544,652	-				+0.3
3,544,654	+				-0.2
3,544,654	+				-0.4
3,544,654	+				-0.8
3,544,661	-				+1.2
3,544,662	-				-0.7
3,544,662	-				+0.6
3,544,823	-				+1.3
3,544,886	-		SO3407	0.12	+1.5
3,544,886	-		SO3407	0.12	-0.4
3,544,887	-		SO3407	0.12	-0.6
3,544,922	-		SO3407	0.15	+0.9
3,544,958	+		SO3407	0.17	+0.1
3,544,992	+		SO3407	0.19	+1.0
3,545,015	+		SO3407	0.20	+0.9
3,545,119	-		SO3407	0.26	+1.3
3,545,180	-		SO3407	0.30	+1.0
3,545,327	-		SO3407	0.39	+1.1
3,545,498	-		SO3407	0.49	+0.9
3,545,667	+		SO3407	0.59	+1.6
3,545,701	-		SO3407	0.61	-0.7
3,545,781	+		SO3407	0.66	-0.1
3,545,782	+		SO3407	0.66	+0.9
3,545,790	-		SO3407	0.66	-0.7
3,545,871	+		SO3407	0.71	-0.7
3,546,073	-		SO3407	0.83	+0.7
3,546,077	+		SO3407	0.83	-0.1
3,546,077	+		SO3407	0.83	-0.6
3,546,077	+		SO3407	0.83	+0.0
3,546,077	+		SO3407	0.83	-0.5
3,546,079	+		SO3407	0.83	+0.9
3,546,085	-		SO3407	0.84	-0.5
3,546,085	-		SO3407	0.84	-1.3
3,546,087	-		SO3407	0.84	-1.0
3,546,096	-		SO3407	0.84	+1.2
3,546,111	-		SO3407	0.85	+0.1
3,546,195	+				-1.0
3,546,230	+				-1.0
3,546,413	-		SO3408	0.17	+1.9
3,546,421	-		SO3408	0.19	-0.1
3,546,457	-		SO3408	0.29	+2.9
3,546,673	-				-0.3
3,546,673	-				-0.2
3,546,778	-				-1.1
3,546,793	+				-1.8
3,546,795	+				-0.4
3,546,798	-				-2.1
3,546,816	-				+0.3
3,546,857	-				+0.2
3,546,898	-		SO3409	0.18	-0.9
3,546,916	+		SO3409	0.22	-0.9
3,546,945	-		SO3409	0.29	+0.5
3,546,989	-		SO3409	0.39	+0.3
3,547,006	+		SO3409	0.42	+0.0
3,547,038	-		SO3409	0.50	-0.1
3,547,048	+		SO3409	0.52	-0.0
3,547,056	-		SO3409	0.54	-0.4
3,547,096	-		SO3409	0.63	-0.5
3,547,277	+				-2.1
3,547,298	+				-0.2
3,547,335	+				+1.2