Strain Fitness in Shewanella oneidensis MR-1 around SO3384

Experiment: C.elegans, mixed culture-2

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	C.elegans, mixed culture-2
3,521,024	+		SO3382	0.41	+3.6
3,521,024	+		SO3382	0.41	+0.5
3,521,032	-		SO3382	0.42	+0.2
3,521,032	-		SO3382	0.42	+0.3
3,521,069	-		SO3382	0.46	-1.8
3,521,069	-		SO3382	0.46	-1.1
3,521,203	-		SO3382	0.63	-1.1
3,521,215	-		SO3382	0.64	-0.4
3,521,347	-		SO3382	0.81	-0.4
3,521,386	+		SO3382	0.86	+0.2
3,521,394	-		SO3382	0.87	-0.8
3,521,409	-		SO3382	0.89	+0.3
3,521,456	+				-0.0
3,521,615	+		SO3383	0.26	-0.7
3,521,617	-		SO3383	0.26	+0.4
3,521,624	+		SO3383	0.28	-0.6
3,521,636	-		SO3383	0.31	-0.2
3,521,701	+		SO3383	0.45	-0.2
3,521,789	+		SO3383	0.65	-0.5
3,521,839	+		SO3383	0.76	+0.3
3,521,839	+		SO3383	0.76	-0.2
3,521,839	+		SO3383	0.76	+0.9
3,521,847	-		SO3383	0.78	-0.5
3,521,871	-		SO3383	0.83	-0.2
3,521,902	-				+0.4
3,521,926	+				-0.7
3,521,961	-				+0.5
3,522,008	+				+0.5
3,522,008	+				-0.4
3,522,024	+				+0.3
3,522,044	+				+0.7
3,522,044	+				+2.0
3,522,047	-				-0.5
3,522,052	-				-0.9
3,522,125	+				-1.7
3,522,222	-	phrB	SO3384	0.15	-0.4
3,522,258	-	phrB	SO3384	0.17	+0.3
3,522,268	-	phrB	SO3384	0.18	+0.7
3,522,330	-	phrB	SO3384	0.22	-1.2
3,522,347	-	phrB	SO3384	0.23	-0.0
3,522,682	+	phrB	SO3384	0.45	-1.2
3,522,682	+	phrB	SO3384	0.45	-1.0
3,522,682	+	phrB	SO3384	0.45	+0.3
3,522,682	+	phrB	SO3384	0.45	+1.2
3,522,687	+	phrB	SO3384	0.45	-1.3
3,522,690	-	phrB	SO3384	0.45	+0.5
3,522,690	-	phrB	SO3384	0.45	-1.2
3,522,690	-	phrB	SO3384	0.45	-2.1
3,522,690	-	phrB	SO3384	0.45	-0.1
3,522,695	-	phrB	SO3384	0.46	+1.4
3,522,717	+	phrB	SO3384	0.47	-1.1
3,522,726	-	phrB	SO3384	0.48	+0.8
3,522,726	-	phrB	SO3384	0.48	-0.3
3,522,841	-	phrB	SO3384	0.55	-1.4
3,522,868	+	phrB	SO3384	0.57	+0.2
3,522,968	+	phrB	SO3384	0.64	-0.5
3,522,969	-	phrB	SO3384	0.64	+1.1
3,522,969	-	phrB	SO3384	0.64	-0.1
3,522,976	-	phrB	SO3384	0.64	+0.3
3,522,981	+	phrB	SO3384	0.64	-1.9
3,523,083	+	phrB	SO3384	0.71	-0.7
3,523,091	-	phrB	SO3384	0.72	-2.2
3,523,091	-	phrB	SO3384	0.72	-0.5
3,523,135	+	phrB	SO3384	0.74	-0.3
3,523,213	+	phrB	SO3384	0.79	+1.1
3,523,327	+	phrB	SO3384	0.87	+0.3
3,523,403	-				-0.4
3,523,403	-				+1.5
3,523,474	-				+1.0
3,523,511	+				-1.1
3,523,511	+				+0.4
3,523,594	-				-0.4
3,523,768	+		SO3385	0.24	+2.7
3,523,798	-		SO3385	0.27	-1.0
3,523,811	+		SO3385	0.28	-0.2
3,523,811	+		SO3385	0.28	+0.2
3,523,811	+		SO3385	0.28	+0.9
3,523,811	+		SO3385	0.28	-3.0
3,523,819	-		SO3385	0.29	-0.0
3,523,819	-		SO3385	0.29	+0.1
3,523,819	-		SO3385	0.29	+1.8
3,523,819	-		SO3385	0.29	-1.8
3,523,819	-		SO3385	0.29	+0.6
3,523,819	-		SO3385	0.29	+1.0
3,523,894	+		SO3385	0.36	+0.4
3,524,165	-		SO3385	0.62	+1.0
3,524,235	-		SO3385	0.69	-0.3
3,524,391	+		SO3385	0.84	+1.6
3,524,478	-				-2.0