Strain Fitness in Shewanella oneidensis MR-1 around SO3358

Experiment: C.elegans, mixed culture-2

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	C.elegans, mixed culture-2
3,499,447	-				-0.4
3,499,447	-				+0.8
3,499,542	+		SO3356	0.33	+1.6
3,499,693	+		SO3356	0.85	-2.4
3,499,701	-		SO3356	0.88	-0.9
3,499,758	+				-1.0
3,499,845	-				-0.1
3,499,908	+		SO3357	0.24	-1.2
3,499,916	-		SO3357	0.26	+0.5
3,499,946	+		SO3357	0.33	+0.8
3,499,954	+		SO3357	0.35	-0.7
3,499,962	-		SO3357	0.37	-0.3
3,500,013	-		SO3357	0.48	-0.4
3,500,123	-		SO3357	0.74	+1.4
3,500,208	-				-1.7
3,500,428	+		SO3358	0.12	-1.5
3,500,436	-		SO3358	0.13	-0.2
3,500,600	+		SO3358	0.40	-0.7
3,500,600	+		SO3358	0.40	-0.3
3,500,608	-		SO3358	0.41	+0.4
3,500,666	-		SO3358	0.50	+0.1
3,500,668	+		SO3358	0.51	+2.0
3,500,668	+		SO3358	0.51	+1.4
3,500,668	+		SO3358	0.51	+0.8
3,500,907	+		SO3358	0.89	-1.5
3,500,915	-				-2.2
3,500,915	-				-1.5
3,501,016	-				-1.5
3,501,071	-				-0.5
3,501,112	-		SO3359	0.12	+2.6
3,501,150	+		SO3359	0.15	+0.1
3,501,152	+		SO3359	0.16	-0.4
3,501,158	+		SO3359	0.16	-1.3
3,501,159	+		SO3359	0.16	-2.6
3,501,159	+		SO3359	0.16	+1.5
3,501,160	-		SO3359	0.16	-1.5
3,501,189	+				+1.7
3,501,297	-		SO3359	0.28	-1.4
3,501,327	-		SO3359	0.31	-0.6
3,501,555	-		SO3359	0.50	+2.4
3,501,597	-		SO3359	0.54	-2.3
3,501,680	+		SO3359	0.61	-0.3
3,501,695	-		SO3359	0.62	-2.3
3,501,697	+		SO3359	0.63	-1.0
3,501,697	+		SO3359	0.63	-0.3
3,501,715	+		SO3359	0.64	-0.7
3,501,804	-		SO3359	0.72	+1.3