Strain Fitness in Shewanella oneidensis MR-1 around SO3352

Experiment: C.elegans, mixed culture-2

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	C.elegans, mixed culture-2
3,496,071	-				-2.9
3,496,077	+				-2.5
3,496,077	+				-2.2
3,496,077	+				-3.3
3,496,077	+				+0.4
3,496,077	+				-1.3
3,496,077	+				+0.4
3,496,077	+				-1.5
3,496,085	-				-1.3
3,496,085	-				-2.1
3,496,085	-				+2.0
3,496,085	-				-2.1
3,496,085	-				+1.8
3,496,094	+				+0.0
3,496,158	-	pilT	SO3351	0.16	-1.1
3,496,375	-	pilT	SO3351	0.37	-0.1
3,496,400	+	pilT	SO3351	0.39	+1.0
3,496,441	-	pilT	SO3351	0.43	-1.2
3,496,489	+	pilT	SO3351	0.48	+0.7
3,496,566	-	pilT	SO3351	0.55	-0.1
3,496,621	-	pilT	SO3351	0.61	+0.4
3,496,757	-	pilT	SO3351	0.74	+0.0
3,496,804	-	pilT	SO3351	0.78	+0.2
3,496,806	+	pilT	SO3351	0.79	-1.0
3,496,875	+	pilT	SO3351	0.85	-2.5
3,496,878	-	pilT	SO3351	0.85	+0.4
3,496,882	+	pilT	SO3351	0.86	-1.3
3,496,890	-	pilT	SO3351	0.87	-2.6
3,496,890	-	pilT	SO3351	0.87	-2.6
3,496,904	+	pilT	SO3351	0.88	-1.2
3,496,972	+				-1.4
3,496,972	+				-1.8
3,497,099	+				+1.0
3,497,099	+				+1.4
3,497,099	+				+0.8
3,497,107	-				-0.6
3,497,107	-				+0.1
3,497,353	-		SO3352	0.40	+3.0
3,497,545	-		SO3352	0.67	-1.1
3,497,545	-		SO3352	0.67	+1.4
3,497,545	-		SO3352	0.67	-1.1
3,497,615	-		SO3352	0.77	-2.1
3,497,793	+				+2.6
3,497,954	+				-1.7
3,497,974	+				+1.1
3,497,974	+				-1.9
3,497,974	+				-0.9
3,497,974	+				+1.4
3,497,982	-				+0.2
3,498,034	+				-1.8
3,498,063	+				-1.3
3,498,094	+	proC	SO3354	0.11	-1.5
3,498,108	+	proC	SO3354	0.13	+1.0
3,498,108	+	proC	SO3354	0.13	-1.5
3,498,116	-	proC	SO3354	0.14	+1.9
3,498,116	-	proC	SO3354	0.14	-2.9
3,498,178	-	proC	SO3354	0.21	+1.4
3,498,180	+	proC	SO3354	0.22	-0.1
3,498,210	+	proC	SO3354	0.25	-2.6
3,498,238	-	proC	SO3354	0.29	+1.5
3,498,255	+	proC	SO3354	0.31	+0.2
3,498,324	+	proC	SO3354	0.39	+1.0
3,498,346	+	proC	SO3354	0.42	-1.5
3,498,374	-	proC	SO3354	0.45	-2.7
3,498,457	-	proC	SO3354	0.56	-0.4
3,498,590	+	proC	SO3354	0.72	-1.1
3,498,696	+	proC	SO3354	0.85	+0.7
3,498,696	+	proC	SO3354	0.85	+0.5
3,498,704	-	proC	SO3354	0.86	+0.7
3,498,711	-	proC	SO3354	0.87	-1.9
3,498,716	+	proC	SO3354	0.87	-1.8