Strain Fitness in Shewanella oneidensis MR-1 around SO3337

Experiment: C.elegans, mixed culture-2

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	C.elegans, mixed culture-2
3,483,211	+		SO3335	0.73	+2.2
3,483,241	+		SO3335	0.77	+0.1
3,483,263	+		SO3335	0.80	+0.7
3,483,263	+		SO3335	0.80	+3.2
3,483,286	+		SO3335	0.82	+1.3
3,483,356	+				+1.0
3,483,520	+				+0.8
3,483,520	+				+2.2
3,483,553	-		SO3336	0.15	-0.5
3,483,555	+		SO3336	0.16	-0.3
3,483,555	+		SO3336	0.16	-0.0
3,483,563	-		SO3336	0.17	-0.3
3,483,571	-		SO3336	0.18	-0.0
3,483,602	+		SO3336	0.24	+0.8
3,483,639	-		SO3336	0.30	+0.2
3,483,675	-		SO3336	0.36	-1.0
3,483,702	-		SO3336	0.41	-0.9
3,483,730	-		SO3336	0.46	+0.7
3,483,777	-		SO3336	0.54	-1.7
3,483,970	+		SO3336	0.88	+0.8
3,483,996	-				-0.3
3,484,045	+				+0.2
3,484,065	-				+0.6
3,484,078	+				+1.1
3,484,189	-		SO3337	0.10	-0.1
3,484,226	-		SO3337	0.13	-0.7
3,484,363	-		SO3337	0.23	-2.4
3,484,380	-		SO3337	0.24	-0.3
3,484,422	+		SO3337	0.27	-0.5
3,484,428	-		SO3337	0.27	+1.6
3,484,429	+		SO3337	0.28	-0.3
3,484,437	-		SO3337	0.28	-2.6
3,484,442	-		SO3337	0.28	+1.0
3,484,517	-		SO3337	0.34	-2.3
3,484,595	-		SO3337	0.39	-0.1
3,484,597	+		SO3337	0.40	-0.5
3,484,597	+		SO3337	0.40	+1.7
3,484,644	-		SO3337	0.43	+1.1
3,484,657	-		SO3337	0.44	-2.1
3,484,672	+		SO3337	0.45	-1.8
3,484,672	+		SO3337	0.45	+1.8
3,484,672	+		SO3337	0.45	+3.0
3,484,680	-		SO3337	0.45	-0.5
3,484,680	-		SO3337	0.45	+2.0
3,484,685	-		SO3337	0.46	-0.2
3,484,780	+		SO3337	0.53	-1.3
3,484,804	-		SO3337	0.54	+1.5
3,484,826	+		SO3337	0.56	+1.0
3,484,838	-		SO3337	0.57	-1.2
3,484,906	-		SO3337	0.62	+1.0
3,484,947	-		SO3337	0.65	+2.6
3,484,957	-		SO3337	0.65	+0.6
3,485,096	+		SO3337	0.75	+0.6
3,485,202	+		SO3337	0.83	+1.6
3,485,207	+		SO3337	0.83	+0.2
3,485,246	+		SO3337	0.86	+1.0
3,485,262	-		SO3337	0.87	+0.3
3,485,310	-				-0.4
3,485,328	-				+0.5
3,485,328	-				+0.5
3,485,359	+				+0.9
3,485,359	+				+0.2
3,485,374	-				+0.5
3,485,405	+				-1.6
3,485,432	-				+0.1
3,485,532	-				-0.7
3,485,666	-				+0.2
3,485,666	-				+1.1
3,485,706	+				+0.2
3,485,760	+				+0.3
3,485,761	+				+0.2
3,485,764	-				-1.0
3,485,766	+				+2.1
3,485,766	+				-1.3
3,485,774	-				+2.2
3,485,774	-				+0.1
3,485,774	-				+1.7
3,485,774	-				-0.6
3,485,779	-	ybjU	SO3338	0.10	-0.0
3,485,779	-	ybjU	SO3338	0.10	+0.2
3,485,798	-	ybjU	SO3338	0.12	-0.5
3,485,807	+	ybjU	SO3338	0.13	-2.3
3,485,812	+	ybjU	SO3338	0.13	-1.7
3,485,815	-	ybjU	SO3338	0.14	-0.2
3,485,820	-	ybjU	SO3338	0.14	-1.7
3,485,848	+	ybjU	SO3338	0.17	+0.1
3,485,857	+	ybjU	SO3338	0.18	-0.3
3,485,857	+	ybjU	SO3338	0.18	-0.5
3,486,072	-	ybjU	SO3338	0.39	-0.5
3,486,157	+	ybjU	SO3338	0.47	+0.8
3,486,157	+	ybjU	SO3338	0.47	-0.1
3,486,158	-	ybjU	SO3338	0.47	+0.6
3,486,165	-	ybjU	SO3338	0.48	-1.5
3,486,183	+	ybjU	SO3338	0.50	-1.8
3,486,183	+	ybjU	SO3338	0.50	-0.5
3,486,183	+	ybjU	SO3338	0.50	-0.8
3,486,183	+	ybjU	SO3338	0.50	+1.0
3,486,183	+	ybjU	SO3338	0.50	+0.7
3,486,191	-	ybjU	SO3338	0.51	+0.7
3,486,191	-	ybjU	SO3338	0.51	-0.9
3,486,191	-	ybjU	SO3338	0.51	-0.4
3,486,191	-	ybjU	SO3338	0.51	+0.1
3,486,191	-	ybjU	SO3338	0.51	+1.9
3,486,191	-	ybjU	SO3338	0.51	-0.0
3,486,191	-	ybjU	SO3338	0.51	-0.3
3,486,191	-	ybjU	SO3338	0.51	-0.7
3,486,191	-	ybjU	SO3338	0.51	-0.7
3,486,224	+	ybjU	SO3338	0.54	-0.3
3,486,232	-	ybjU	SO3338	0.55	+0.1
3,486,362	-	ybjU	SO3338	0.68	-1.0
3,486,411	-	ybjU	SO3338	0.72	-1.7