Strain Fitness in Shewanella oneidensis MR-1 around SO3285

Experiment: C.elegans, mixed culture-2

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	C.elegans, mixed culture-2
3,424,053	+		SO3282	0.76	-2.3
3,424,150	+		SO3282	0.80	-2.7
3,424,171	+		SO3282	0.82	+0.1
3,424,234	-		SO3282	0.85	-0.8
3,424,445	+				+1.0
3,424,603	+				+1.4
3,424,636	+				-0.9
3,424,978	+				+0.8
3,424,982	+				+2.1
3,424,986	-				-1.3
3,425,000	-				-1.7
3,425,067	+				+0.5
3,425,067	+				-0.1
3,425,072	+				-0.2
3,425,075	-				-0.5
3,425,075	-				+0.8
3,425,167	-	cydB	SO3285	0.16	+0.8
3,425,211	+	cydB	SO3285	0.20	-0.2
3,425,299	+	cydB	SO3285	0.27	+1.9
3,425,398	+	cydB	SO3285	0.36	+0.8
3,425,398	+	cydB	SO3285	0.36	-2.1
3,425,401	-	cydB	SO3285	0.36	+2.1
3,425,406	-	cydB	SO3285	0.37	-2.5
3,425,406	-	cydB	SO3285	0.37	-0.7
3,425,406	-	cydB	SO3285	0.37	+1.5
3,425,406	-	cydB	SO3285	0.37	-0.2
3,425,548	-	cydB	SO3285	0.49	-1.1
3,425,852	+	cydB	SO3285	0.76	+0.5
3,425,887	+	cydB	SO3285	0.79	-0.7
3,426,081	+				-1.4
3,426,081	+				+1.5
3,426,089	-				+1.1
3,426,089	-				-0.1
3,426,239	+				+0.3
3,426,244	+				+1.1
3,426,244	+				-0.4
3,426,244	+				+2.1
3,426,244	+				-0.2
3,426,252	-				-0.7
3,426,252	-				-0.4
3,426,252	-				-2.1
3,426,252	-				-0.4
3,426,252	-				-2.0
3,426,252	-				+0.5
3,426,316	-	cydA	SO3286	0.11	-0.8
3,426,334	-	cydA	SO3286	0.12	+0.1
3,426,334	-	cydA	SO3286	0.12	-0.1
3,426,334	-	cydA	SO3286	0.12	-0.2
3,426,334	-	cydA	SO3286	0.12	-0.5
3,426,351	+	cydA	SO3286	0.13	+1.1
3,426,403	+	cydA	SO3286	0.17	+1.1
3,426,531	+	cydA	SO3286	0.25	+0.8
3,426,539	-	cydA	SO3286	0.26	-0.1
3,426,610	+	cydA	SO3286	0.30	-0.7
3,426,909	+	cydA	SO3286	0.49	+0.1
3,426,986	-	cydA	SO3286	0.54	-1.7