Strain Fitness in Shewanella oneidensis MR-1 around SO3268

Experiment: C.elegans, mixed culture-2

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	C.elegans, mixed culture-2
3,404,182	+		SO3267	0.24	+0.6
3,404,190	-		SO3267	0.25	+0.8
3,404,242	+		SO3267	0.31	-0.2
3,404,269	-		SO3267	0.34	-0.8
3,404,283	-		SO3267	0.35	-0.7
3,404,461	-		SO3267	0.55	-0.5
3,404,486	+		SO3267	0.58	+1.1
3,404,493	+		SO3267	0.58	+2.3
3,404,510	+		SO3267	0.60	+0.9
3,404,510	+		SO3267	0.60	-0.4
3,404,510	+		SO3267	0.60	+0.2
3,404,510	+		SO3267	0.60	+0.8
3,404,510	+		SO3267	0.60	-0.3
3,404,515	+		SO3267	0.61	+2.3
3,404,518	-		SO3267	0.61	+0.3
3,404,524	+		SO3267	0.62	-1.4
3,404,532	-		SO3267	0.63	+0.4
3,404,532	-		SO3267	0.63	+1.5
3,404,584	-		SO3267	0.68	-1.2
3,404,619	+		SO3267	0.72	+0.7
3,404,637	+		SO3267	0.74	+0.5
3,404,718	+		SO3267	0.83	-2.7
3,404,767	-		SO3267	0.88	-0.0
3,404,787	-				+2.0
3,404,809	+				-0.8
3,404,817	+				-0.1
3,404,825	-				+0.9
3,404,893	-				+0.7
3,404,956	-				+0.0
3,405,060	+				+0.2
3,405,088	+				-1.8
3,405,089	+				-1.6
3,405,104	-				+0.6
3,405,106	+				+0.5
3,405,114	-				-0.7
3,405,114	-				-1.6
3,405,191	+				+0.3
3,405,191	+				-1.1
3,405,191	+				-1.1
3,405,191	+				-0.5
3,405,193	+				-0.8
3,405,193	+				-2.6
3,405,193	+				-1.0
3,405,194	-				-0.1
3,405,199	-				-2.2
3,405,199	-				-0.2
3,405,199	-				-1.7
3,405,199	-				-1.1
3,405,199	-				-1.5
3,405,199	-				-2.0
3,405,199	-				+0.5
3,405,201	-				-1.4
3,405,201	-				-0.9
3,405,201	-				-0.7
3,405,239	+				-0.6
3,405,239	+				-0.6
3,405,239	+				-0.0
3,405,239	+				-0.8
3,405,239	+				-2.5
3,405,247	-				-1.5
3,405,247	-				+0.3
3,405,247	-				-1.1
3,405,247	-				-1.0
3,405,254	-				-0.8
3,405,265	-				+1.5
3,405,287	-		SO3268	0.11	-1.5
3,405,387	+		SO3268	0.16	-1.0
3,405,388	+		SO3268	0.16	-0.5
3,405,396	-		SO3268	0.16	-0.7
3,405,396	-		SO3268	0.16	-1.0
3,405,396	-		SO3268	0.16	-2.1
3,405,534	-		SO3268	0.24	-0.0
3,405,566	+		SO3268	0.25	-0.9
3,405,566	+		SO3268	0.25	-0.4
3,405,566	+		SO3268	0.25	-1.6
3,405,566	+		SO3268	0.25	-1.9
3,405,566	+		SO3268	0.25	+0.5
3,405,566	+		SO3268	0.25	-1.7
3,405,566	+		SO3268	0.25	-1.5
3,405,574	-		SO3268	0.26	-0.3
3,405,574	-		SO3268	0.26	-1.9
3,405,574	-		SO3268	0.26	-0.1
3,405,574	-		SO3268	0.26	-1.0
3,405,574	-		SO3268	0.26	-0.8
3,405,600	-		SO3268	0.27	-1.8
3,405,649	+		SO3268	0.30	-0.6
3,405,748	-		SO3268	0.35	-1.3
3,405,748	-		SO3268	0.35	-0.2
3,405,763	+		SO3268	0.36	+0.3
3,405,870	-		SO3268	0.41	-1.2
3,405,889	-		SO3268	0.42	-2.1
3,405,909	+		SO3268	0.43	-1.2
3,405,917	-		SO3268	0.44	-1.7
3,405,931	-		SO3268	0.44	-2.3
3,405,941	-		SO3268	0.45	-2.1
3,406,015	+		SO3268	0.49	-0.5
3,406,030	-		SO3268	0.50	-1.5
3,406,030	-		SO3268	0.50	-1.1
3,406,068	+		SO3268	0.52	-2.3
3,406,083	+		SO3268	0.52	+0.0
3,406,260	+		SO3268	0.62	-1.8
3,406,266	+		SO3268	0.62	-0.9
3,406,332	+		SO3268	0.65	-1.6
3,406,333	+		SO3268	0.65	-0.2
3,406,409	-		SO3268	0.69	-0.7
3,406,855	-				+0.8
3,406,912	+				+0.0
3,406,913	+				-1.0
3,407,031	-				-2.4
3,407,033	-				-1.1
3,407,155	-				-1.0
3,407,165	-				-0.8
3,407,174	+		SO3269	0.10	-0.9
3,407,261	+		SO3269	0.16	+0.4
3,407,269	-		SO3269	0.16	-2.2
3,407,310	-		SO3269	0.18	-1.9
3,407,360	-		SO3269	0.21	+0.2
3,407,361	+		SO3269	0.21	-1.6
3,407,372	+		SO3269	0.22	+0.6
3,407,377	+		SO3269	0.22	-0.8
3,407,395	-		SO3269	0.23	-1.0
3,407,449	+		SO3269	0.26	+0.9
3,407,480	+		SO3269	0.28	-1.6
3,407,486	+		SO3269	0.29	-0.1
3,407,545	+		SO3269	0.32	+1.1
3,407,600	+		SO3269	0.35	+0.8
3,407,670	-		SO3269	0.39	-1.8
3,407,672	+		SO3269	0.39	-0.4
3,407,680	-		SO3269	0.40	+0.2
3,407,686	+		SO3269	0.40	-0.9
3,407,737	-		SO3269	0.43	+0.1
3,407,769	+		SO3269	0.45	-1.8
3,407,854	+		SO3269	0.50	+1.9
3,407,896	+		SO3269	0.52	-2.3
3,407,947	+		SO3269	0.55	-1.7
3,407,947	+		SO3269	0.55	+0.0