Strain Fitness in Shewanella oneidensis MR-1 around SO3248

Experiment: C.elegans, mixed culture-2

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	C.elegans, mixed culture-2
3,386,147	+	flgE	SO3247	0.38	+2.3
3,386,155	-	flgE	SO3247	0.38	-1.0
3,386,182	+	flgE	SO3247	0.40	-0.8
3,386,190	-	flgE	SO3247	0.41	-0.2
3,386,212	+	flgE	SO3247	0.42	-0.5
3,386,212	+	flgE	SO3247	0.42	+1.1
3,386,220	-	flgE	SO3247	0.43	-1.7
3,386,245	-	flgE	SO3247	0.45	+0.5
3,386,249	+	flgE	SO3247	0.45	-1.2
3,386,319	+	flgE	SO3247	0.50	-0.5
3,386,351	-	flgE	SO3247	0.52	-0.0
3,386,393	-	flgE	SO3247	0.56	-1.2
3,386,439	-	flgE	SO3247	0.59	-1.2
3,386,526	+	flgE	SO3247	0.65	-0.3
3,386,534	-	flgE	SO3247	0.66	-0.8
3,386,561	+	flgE	SO3247	0.68	-1.2
3,386,569	-	flgE	SO3247	0.69	-1.7
3,386,749	-	flgE	SO3247	0.82	+0.1
3,386,913	-				-1.0
3,386,952	-				-0.1
3,387,062	+				-1.1
3,387,070	-				-2.2
3,387,096	-				-0.1
3,387,106	-				-0.1
3,387,187	-	flgD	SO3248	0.16	-1.6
3,387,292	-	flgD	SO3248	0.30	-0.2
3,387,327	+	flgD	SO3248	0.34	+0.1
3,387,390	+	flgD	SO3248	0.43	+0.5
3,387,457	+	flgD	SO3248	0.51	+0.9
3,387,489	-	flgD	SO3248	0.56	-0.0
3,387,611	-	flgD	SO3248	0.72	-1.7
3,387,612	-	flgD	SO3248	0.72	-1.2
3,387,629	-	flgD	SO3248	0.74	-0.7
3,387,761	-				-1.6
3,387,823	-				-0.0
3,387,854	+				+0.5
3,387,906	-				-1.2
3,387,954	+	flgC	SO3249	0.20	+0.3
3,388,058	-	flgC	SO3249	0.45	-1.2
3,388,069	+	flgC	SO3249	0.48	+1.5
3,388,092	+	flgC	SO3249	0.53	+0.7
3,388,100	-	flgC	SO3249	0.55	+0.1
3,388,111	-	flgC	SO3249	0.58	-0.8
3,388,121	-	flgC	SO3249	0.60	-1.3
3,388,158	+	flgC	SO3249	0.69	+0.8
3,388,246	+				-0.4
3,388,503	+	flgB	SO3250	0.53	+3.1
3,388,503	+	flgB	SO3250	0.53	-0.2
3,388,503	+	flgB	SO3250	0.53	+1.5
3,388,503	+	flgB	SO3250	0.53	+0.5
3,388,521	-	flgB	SO3250	0.58	-1.2
3,388,521	-	flgB	SO3250	0.58	-4.0
3,388,642	-	flgB	SO3250	0.87	-0.7
3,388,664	-				-2.3
3,388,664	-				-2.2