Strain Fitness in Shewanella oneidensis MR-1 around SO3220

Experiment: C.elegans, mixed culture-2

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	C.elegans, mixed culture-2
3,358,088	-	fliP	SO3218	0.31	-1.4
3,358,152	+	fliP	SO3218	0.40	-0.4
3,358,196	+	fliP	SO3218	0.46	-0.3
3,358,204	-	fliP	SO3218	0.47	+1.6
3,358,249	-	fliP	SO3218	0.53	+0.2
3,358,319	-	fliP	SO3218	0.62	+1.6
3,358,321	+	fliP	SO3218	0.62	-0.0
3,358,436	-	fliP	SO3218	0.78	-0.1
3,358,485	-	fliP	SO3218	0.85	-0.4
3,358,565	+				-0.3
3,358,594	-				+1.8
3,358,619	+				-2.0
3,358,757	+	fliO	SO3219	0.39	+1.1
3,358,757	+	fliO	SO3219	0.39	+1.1
3,358,861	+	fliO	SO3219	0.64	+3.1
3,358,962	+	fliO	SO3219	0.89	-1.9
3,359,028	-				-2.1
3,359,074	+				+1.0
3,359,082	-	fliN	SO3220	0.11	-1.2
3,359,157	+	fliN	SO3220	0.31	+0.1
3,359,178	+	fliN	SO3220	0.37	+1.5
3,359,180	+	fliN	SO3220	0.37	-2.3
3,359,299	-	fliN	SO3220	0.69	-0.7
3,359,300	+	fliN	SO3220	0.69	-0.7
3,359,327	+	fliN	SO3220	0.76	-0.0
3,359,336	+	fliN	SO3220	0.79	-0.0
3,359,401	-				+1.1
3,359,408	+				-0.0
3,359,518	+				+0.1
3,359,684	-	fliM	SO3221	0.25	-0.9
3,359,732	-	fliM	SO3221	0.29	-2.0
3,359,742	-	fliM	SO3221	0.30	-1.7
3,359,829	-	fliM	SO3221	0.39	-0.8
3,359,894	+	fliM	SO3221	0.45	+2.1
3,359,909	+	fliM	SO3221	0.47	+0.9
3,359,947	+	fliM	SO3221	0.50	+0.8
3,359,955	-	fliM	SO3221	0.51	-0.3
3,359,966	+	fliM	SO3221	0.52	-0.5
3,359,974	-	fliM	SO3221	0.53	-0.8
3,360,006	-	fliM	SO3221	0.56	-0.9
3,360,011	-	fliM	SO3221	0.56	+0.3
3,360,157	+	fliM	SO3221	0.71	-0.7
3,360,237	-	fliM	SO3221	0.78	+0.1
3,360,327	+	fliM	SO3221	0.87	-0.6
3,360,415	+				-0.3