Strain Fitness in Shewanella oneidensis MR-1 around SO3217

Experiment: C.elegans, mixed culture-2

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	C.elegans, mixed culture-2
3,356,599	-	flhB	SO3215	0.87	-0.9
3,356,610	-	flhB	SO3215	0.88	-0.3
3,356,631	-				-1.3
3,356,692	+				-1.5
3,356,706	+				+0.6
3,356,748	+				+0.9
3,356,797	-				+1.6
3,356,828	-				-2.0
3,356,839	-				-0.8
3,356,839	-				-2.3
3,356,870	-	fliR	SO3216	0.13	-1.2
3,357,018	-	fliR	SO3216	0.31	-0.5
3,357,069	+	fliR	SO3216	0.38	-0.3
3,357,072	-	fliR	SO3216	0.38	-2.2
3,357,310	+	fliR	SO3216	0.68	-0.7
3,357,405	-	fliR	SO3216	0.80	-2.3
3,357,433	+	fliR	SO3216	0.83	-2.5
3,357,517	+				-1.9
3,357,524	-				+0.7
3,357,623	+	fliQ	SO3217	0.20	+0.5
3,357,623	+	fliQ	SO3217	0.20	-2.0
3,357,670	+	fliQ	SO3217	0.37	+0.1
3,357,697	-	fliQ	SO3217	0.47	+0.8
3,357,697	-	fliQ	SO3217	0.47	-1.4
3,357,744	+	fliQ	SO3217	0.65	-0.8
3,357,758	+	fliQ	SO3217	0.70	-2.6
3,357,826	+				+1.6
3,357,858	+				-0.8
3,357,861	-				-0.1
3,357,953	-	fliP	SO3218	0.13	-1.5
3,357,960	+	fliP	SO3218	0.14	-1.5
3,357,970	-	fliP	SO3218	0.15	-1.2
3,358,088	-	fliP	SO3218	0.31	-1.4
3,358,152	+	fliP	SO3218	0.40	-0.4
3,358,196	+	fliP	SO3218	0.46	-0.3
3,358,204	-	fliP	SO3218	0.47	+1.6
3,358,249	-	fliP	SO3218	0.53	+0.2
3,358,319	-	fliP	SO3218	0.62	+1.6
3,358,321	+	fliP	SO3218	0.62	-0.0
3,358,436	-	fliP	SO3218	0.78	-0.1
3,358,485	-	fliP	SO3218	0.85	-0.4
3,358,565	+				-0.3
3,358,594	-				+1.8
3,358,619	+				-2.0
3,358,757	+	fliO	SO3219	0.39	+1.1
3,358,757	+	fliO	SO3219	0.39	+1.1