Strain Fitness in Shewanella oneidensis MR-1 around SO3115

Experiment: C.elegans, mixed culture-2

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	C.elegans, mixed culture-2
3,243,226	+	queA	SO3114	0.21	+0.7
3,243,226	+	queA	SO3114	0.21	+1.5
3,243,260	-	queA	SO3114	0.25	+1.6
3,243,353	+	queA	SO3114	0.34	-0.5
3,243,545	-	queA	SO3114	0.52	-0.4
3,243,568	-	queA	SO3114	0.54	-0.1
3,243,612	-	queA	SO3114	0.59	+0.5
3,243,627	-	queA	SO3114	0.60	-1.0
3,243,629	+	queA	SO3114	0.60	+1.5
3,243,751	-	queA	SO3114	0.72	+0.5
3,243,766	+	queA	SO3114	0.74	-0.1
3,243,825	-	queA	SO3114	0.79	-0.2
3,243,975	-				-0.5
3,244,053	+				-0.3
3,244,058	+				-0.6
3,244,058	+				-1.8
3,244,074	+				+0.2
3,244,097	+				+0.8
3,244,126	-		SO3115	0.10	-0.0
3,244,126	-		SO3115	0.10	+0.5
3,244,134	-		SO3115	0.14	-0.4
3,244,222	+		SO3115	0.56	+0.5
3,244,233	-		SO3115	0.61	-0.6
3,244,262	+		SO3115	0.75	+2.9
3,244,376	-				+0.3
3,244,610	+		SO3116	0.18	+0.5
3,244,726	-		SO3116	0.37	+2.1
3,244,751	+		SO3116	0.41	+1.7
3,244,809	+		SO3116	0.50	-0.4
3,244,809	+		SO3116	0.50	+1.1
3,244,812	-		SO3116	0.51	-0.5
3,244,817	-		SO3116	0.52	-1.1
3,244,888	-		SO3116	0.63	+1.0
3,244,926	-		SO3116	0.69	-1.6
3,244,950	+		SO3116	0.73	-0.3
3,244,959	-		SO3116	0.75	+0.9
3,244,981	-		SO3116	0.78	+0.5
3,245,054	+				+0.1
3,245,068	-				+0.6
3,245,094	-				+0.5
3,245,098	+				+0.1
3,245,112	+				+1.5
3,245,154	-				+1.6
3,245,154	-				-1.2
3,245,193	+				-0.2
3,245,276	-		SO3117	0.12	-1.5