Strain Fitness in Shewanella oneidensis MR-1 around SO3051

Experiment: C.elegans, mixed culture-2

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	C.elegans, mixed culture-2
3,162,314	+		SO3049	0.54	-0.5
3,162,322	-		SO3049	0.56	-1.0
3,162,343	+		SO3049	0.60	-0.3
3,162,371	-		SO3049	0.65	+0.1
3,162,371	-		SO3049	0.65	-1.2
3,162,383	+		SO3049	0.68	+0.9
3,162,391	-		SO3049	0.69	-0.6
3,162,391	-		SO3049	0.69	-2.1
3,162,484	+		SO3049	0.88	-0.2
3,162,492	-				-0.3
3,162,492	-				-0.7
3,162,492	-				-1.4
3,162,492	-				+0.2
3,162,492	-				+0.7
3,162,550	+				-0.2
3,162,556	-				+0.3
3,162,603	+				+1.0
3,162,611	-				+0.0
3,162,611	-				+1.3
3,162,611	-				-0.5
3,162,667	-		SO3050	0.18	+1.7
3,162,796	+		SO3050	0.36	+0.5
3,162,847	+		SO3050	0.44	+0.5
3,163,275	+				+0.4
3,163,478	-		SO3051	0.24	-0.2
3,163,507	+		SO3051	0.27	+1.2
3,163,590	-		SO3051	0.35	-0.2
3,163,653	-		SO3051	0.41	+0.5
3,163,675	-		SO3051	0.43	-1.5
3,163,713	+		SO3051	0.47	+0.3
3,163,820	+		SO3051	0.58	+1.4
3,163,820	+		SO3051	0.58	-0.0
3,163,820	+		SO3051	0.58	+0.7
3,163,849	+		SO3051	0.61	+1.0
3,164,007	+		SO3051	0.76	-0.4
3,164,040	+		SO3051	0.79	+0.7
3,164,081	-		SO3051	0.84	-0.0
3,164,170	+				-0.2
3,164,187	+				-0.2
3,164,213	-				+0.8
3,164,251	-				-1.0
3,164,279	-				+0.9
3,164,426	+				+0.3
3,164,483	+				-0.4
3,164,491	-				+0.7
3,164,529	-				+0.0
3,164,583	+				-1.7
3,164,583	+				+0.9
3,164,583	+				+0.6
3,164,583	+				+0.2
3,164,583	+				-0.5
3,164,591	-				+1.0
3,164,591	-				+2.4
3,164,656	-		SO3052	0.11	-0.5
3,164,759	+		SO3052	0.17	-0.2
3,164,851	+		SO3052	0.22	-2.6
3,164,859	-		SO3052	0.23	-1.0
3,165,014	-		SO3052	0.32	+0.5
3,165,054	+		SO3052	0.34	-0.5
3,165,145	+		SO3052	0.39	-0.4
3,165,159	-		SO3052	0.40	+1.5