Strain Fitness in Shewanella oneidensis MR-1 around SO3035

Experiment: C.elegans, mixed culture-2

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	C.elegans, mixed culture-2
3,146,773	+		SO3034	0.29	+0.0
3,146,783	+		SO3034	0.30	-0.5
3,146,791	-		SO3034	0.30	-1.7
3,146,872	-		SO3034	0.38	+0.3
3,146,883	-		SO3034	0.39	+0.7
3,146,951	-		SO3034	0.45	-1.8
3,147,014	-		SO3034	0.51	+0.3
3,147,089	+		SO3034	0.58	+0.4
3,147,160	-		SO3034	0.64	+0.2
3,147,176	-		SO3034	0.66	+1.0
3,147,202	+		SO3034	0.68	-0.2
3,147,212	+		SO3034	0.69	+0.4
3,147,227	+		SO3034	0.70	-1.0
3,147,237	+		SO3034	0.71	+0.8
3,147,326	-		SO3034	0.80	-0.2
3,147,400	-		SO3034	0.86	-0.4
3,147,410	-		SO3034	0.87	+0.8
3,147,437	+		SO3034	0.90	-0.4
3,147,459	-				-0.1
3,147,579	-				+0.5
3,147,643	-				-0.6
3,147,671	-				-0.6
3,147,866	-	ispZ	SO3035	0.30	+0.4
3,147,888	-	ispZ	SO3035	0.34	-2.3
3,147,896	+	ispZ	SO3035	0.35	-1.7
3,147,896	+	ispZ	SO3035	0.35	-0.2
3,147,904	-	ispZ	SO3035	0.37	-0.4
3,148,031	-	ispZ	SO3035	0.60	-2.0
3,148,104	-	ispZ	SO3035	0.73	-0.9
3,148,165	+	ispZ	SO3035	0.85	-0.5
3,148,166	+	ispZ	SO3035	0.85	-0.6
3,148,166	+	ispZ	SO3035	0.85	-1.7
3,148,174	-	ispZ	SO3035	0.86	+1.0
3,148,196	+				-1.7
3,148,266	+				+0.4
3,148,368	+		SO3036	0.40	+0.5
3,148,376	-		SO3036	0.43	-1.3
3,148,458	+		SO3036	0.70	-0.9
3,148,458	+		SO3036	0.70	+0.7
3,148,458	+		SO3036	0.70	+0.5
3,148,458	+		SO3036	0.70	-1.3
3,148,458	+		SO3036	0.70	+1.0
3,148,458	+		SO3036	0.70	+1.4
3,148,458	+		SO3036	0.70	+0.4
3,148,458	+		SO3036	0.70	+0.5
3,148,458	+		SO3036	0.70	+1.6
3,148,458	+		SO3036	0.70	-0.0
3,148,461	-		SO3036	0.71	+0.5
3,148,466	-		SO3036	0.73	-0.6
3,148,466	-		SO3036	0.73	-0.5
3,148,466	-		SO3036	0.73	+0.4
3,148,466	-		SO3036	0.73	-2.2
3,148,466	-		SO3036	0.73	-1.0
3,148,466	-		SO3036	0.73	+2.5
3,148,505	-		SO3036	0.86	-0.7
3,148,691	+	xth	SO3037	0.18	-0.9
3,148,750	+	xth	SO3037	0.25	+1.1
3,148,750	-	xth	SO3037	0.25	-2.0
3,148,772	-	xth	SO3037	0.28	+1.0
3,148,830	+	xth	SO3037	0.35	-0.2
3,148,840	+	xth	SO3037	0.36	-1.1
3,148,901	-	xth	SO3037	0.44	-1.7
3,148,901	-	xth	SO3037	0.44	+0.2
3,148,932	-	xth	SO3037	0.47	-1.7
3,149,152	+	xth	SO3037	0.74	+1.1
3,149,167	+	xth	SO3037	0.76	-3.1
3,149,242	-	xth	SO3037	0.85	+0.4