Strain Fitness in Shewanella oneidensis MR-1 around SO3029

Experiment: C.elegans, mixed culture-2

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	C.elegans, mixed culture-2
3,138,151	-				+0.8
3,138,151	-				-2.1
3,138,420	-				-0.6
3,138,570	-		SO3027	0.12	+0.3
3,138,577	-		SO3027	0.13	-0.9
3,138,857	+		SO3027	0.76	-0.2
3,138,865	-		SO3027	0.78	-0.0
3,138,909	+		SO3027	0.88	-0.7
3,138,909	+		SO3027	0.88	-0.8
3,138,956	+				+0.4
3,138,995	+				-1.3
3,139,131	+				-0.4
3,139,131	-				+0.6
3,139,131	-				+0.7
3,139,160	-				+0.6
3,139,310	-		SO3029	0.58	-1.0
3,139,599	-				+0.5
3,139,766	-				+0.1
3,139,910	-				-0.0
3,139,948	-				-0.1
3,139,950	-				-2.7
3,140,000	+				-0.6
3,140,060	+				-0.3
3,140,076	+				-0.4
3,140,084	-				+0.4
3,140,095	+				+1.7
3,140,111	+				+0.1
3,140,160	+	alcA	SO3030	0.10	-2.2
3,140,276	+	alcA	SO3030	0.18	+0.3
3,140,284	-	alcA	SO3030	0.19	+2.0