Strain Fitness in Shewanella oneidensis MR-1 around SO3012

Experiment: C.elegans, mixed culture-2

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	C.elegans, mixed culture-2
3,123,783	-		SO3008	0.19	-0.0
3,123,793	+		SO3008	0.22	+0.8
3,123,802	-		SO3008	0.24	-0.2
3,123,854	-		SO3008	0.36	+1.7
3,123,900	+		SO3008	0.48	+0.0
3,123,900	+		SO3008	0.48	+0.6
3,123,900	+		SO3008	0.48	+0.5
3,123,900	+		SO3008	0.48	-0.4
3,123,908	-		SO3008	0.50	-0.5
3,123,908	-		SO3008	0.50	-1.4
3,124,017	+		SO3008	0.76	+1.2
3,124,025	-		SO3008	0.78	+0.0
3,124,047	+		SO3008	0.83	-1.9
3,124,098	+				-0.5
3,124,099	+				-0.7
3,124,099	+				+2.3
3,124,099	+				-1.3
3,124,099	+				+0.7
3,124,099	+				-1.2
3,124,099	+				+0.7
3,124,099	+				-1.1
3,124,099	+				-0.7
3,124,099	+				+0.7
3,124,106	-				+0.5
3,124,106	-				-0.5
3,124,107	-				-1.0
3,124,107	-				+0.3
3,124,107	-				+0.7
3,124,107	-				-2.1
3,124,107	-				-2.3
3,124,107	-				+0.2
3,124,107	-				+0.2
3,124,116	-				+0.8
3,124,178	-		SO3009	0.23	-0.6
3,124,195	+		SO3009	0.29	+0.4
3,124,336	-		SO3009	0.80	+0.6
3,124,360	+		SO3009	0.89	+0.2
3,124,360	+		SO3009	0.89	+2.1
3,124,360	+		SO3009	0.89	+1.2
3,124,360	+		SO3009	0.89	+0.8
3,124,360	+		SO3009	0.89	+3.4
3,124,360	+		SO3009	0.89	-3.0
3,124,360	+		SO3009	0.89	+0.4
3,124,360	+		SO3009	0.89	+0.4
3,124,360	+		SO3009	0.89	-0.5
3,124,360	+		SO3009	0.89	+1.0
3,124,360	+		SO3009	0.89	-1.1
3,124,360	+		SO3009	0.89	+1.3
3,124,360	+				+1.4
3,124,360	+		SO3009	0.89	-0.1
3,124,360	+		SO3009	0.89	-0.9
3,124,360	+		SO3009	0.89	+0.3
3,124,360	+		SO3009	0.89	+0.2
3,124,368	-				+1.4
3,124,368	-				+0.4
3,124,368	-				-0.4
3,124,368	-				-0.7
3,124,368	-				+0.3
3,124,368	-				+0.1
3,124,368	-				+2.2
3,124,368	-				+0.9
3,124,390	-				+1.5
3,124,390	-				+1.0
3,124,390	-				+1.7
3,124,390	-				+0.7
3,124,390	-				-0.6
3,124,425	+		SO3010	0.23	-1.7
3,124,433	-		SO3010	0.27	+0.3
3,124,433	-		SO3010	0.27	-1.4
3,124,433	-		SO3010	0.27	+1.7
3,124,433	-		SO3010	0.27	-1.6
3,124,433	-		SO3010	0.27	-1.0
3,124,501	+		SO3010	0.61	+0.4
3,124,501	+		SO3010	0.61	-0.3
3,124,540	+				-1.5
3,124,540	+				-0.3
3,124,546	+				+0.3
3,124,557	+				-0.6
3,124,564	-				-0.2
3,124,602	-		SO3011	0.27	+0.1
3,124,699	-		SO3011	0.66	-0.4
3,124,796	+		SO3012	0.11	+1.3
3,124,801	+		SO3012	0.14	-0.1
3,124,801	+		SO3012	0.14	+0.2
3,124,804	-		SO3012	0.15	-2.7
3,124,806	+		SO3012	0.16	+2.8
3,124,809	-		SO3012	0.17	-1.2
3,124,870	+		SO3012	0.46	-0.1
3,125,000	+				+2.0
3,125,018	-				+0.8
3,125,020	+				+2.0
3,125,028	-				+0.7
3,125,028	-				-0.4
3,125,028	-				+1.2
3,125,083	-				+0.0
3,125,126	-		SO3013	0.11	-1.1
3,125,133	+		SO3013	0.11	+0.3
3,125,141	-		SO3013	0.12	+1.0
3,125,334	+		SO3013	0.27	-1.9
3,125,431	-		SO3013	0.35	-0.7
3,125,447	+		SO3013	0.36	-0.0
3,125,447	+		SO3013	0.36	-1.0
3,125,792	-		SO3013	0.64	-1.4
3,125,886	+		SO3013	0.71	-3.1
3,125,886	+		SO3013	0.71	+0.0
3,125,886	+		SO3013	0.71	+0.2
3,125,894	-		SO3013	0.72	+0.6
3,125,894	-		SO3013	0.72	-0.3
3,125,894	-		SO3013	0.72	+0.4
3,125,894	-		SO3013	0.72	+0.8
3,125,940	+		SO3013	0.75	-0.2