Strain Fitness in Shewanella oneidensis MR-1 around SO_2933

Experiment: C.elegans, mixed culture-2

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	C.elegans, mixed culture-2
3,066,956	-		SO2932	0.26	+2.0
3,066,978	+		SO2932	0.28	-0.3
3,066,988	-		SO2932	0.29	-0.2
3,066,998	-		SO2932	0.30	-0.4
3,067,013	+		SO2932	0.31	-0.3
3,067,021	-		SO2932	0.32	+0.4
3,067,054	-		SO2932	0.35	-0.9
3,067,251	+		SO2932	0.54	+1.9
3,067,272	-		SO2932	0.56	-0.4
3,067,322	-		SO2932	0.60	+1.2
3,067,369	+		SO2932	0.65	-1.8
3,067,416	-		SO2932	0.69	-0.2
3,067,475	-		SO2932	0.75	-1.2
3,067,585	+		SO2932	0.85	-1.7
3,067,586	-		SO2932	0.85	+1.1
3,067,595	+		SO2932	0.86	+1.0
3,067,601	+		SO2932	0.87	-0.3
3,067,609	-		SO2932	0.87	-2.1
3,067,619	-		SO2932	0.88	-1.1
3,067,624	-		SO2932	0.89	+0.3
3,067,683	-				+0.4
3,067,686	+				+0.2
3,067,686	+				-2.4
3,067,686	+				+1.8
3,067,686	+				+0.6
3,067,694	-				-0.5
3,067,694	-				+2.2
3,067,694	-				-0.5
3,067,739	+				+0.1
3,067,748	+				-0.3
3,067,776	-				-1.0
3,067,786	+				-0.1
3,067,820	+				+1.3
3,067,820	+				+0.6
3,067,915	+				+0.1
3,067,915	+				-0.0
3,067,915	+				+1.4
3,067,923	-				-0.1
3,067,923	-				-0.8
3,067,923	-				+0.5
3,067,937	+				-1.3
3,068,042	+		SO_2933	0.11	+0.4
3,068,125	-		SO_2933	0.19	+0.9
3,068,157	-		SO_2933	0.22	+0.3
3,068,200	+		SO_2933	0.26	+2.0
3,068,303	-		SO_2933	0.36	+0.9
3,068,412	-		SO_2933	0.47	+0.1
3,068,592	+		SO_2933	0.65	-0.3
3,068,698	+		SO_2933	0.75	+0.5
3,068,751	-		SO_2933	0.80	+0.7
3,068,751	-		SO_2933	0.80	-0.1
3,068,776	-		SO_2933	0.83	+0.8
3,068,831	-		SO_2933	0.88	+1.2
3,068,967	+				-0.9
3,068,975	-				-1.3
3,069,014	-				+2.0
3,069,014	-				+0.8
3,069,014	-				+0.9
3,069,014	-				+1.4
3,069,087	+				-0.9
3,069,162	-				-0.2
3,069,190	-				-0.8
3,069,287	+				-0.7
3,069,295	-				-0.6
3,069,307	-				+0.1
3,069,317	+		SO2934	0.10	-0.0
3,069,450	+		SO2934	0.16	-0.6
3,069,502	-		SO2934	0.18	+1.4
3,069,542	-		SO2934	0.19	-1.5
3,069,577	-		SO2934	0.21	-0.2
3,069,584	+		SO2934	0.21	-0.4
3,069,621	+		SO2934	0.22	-1.7
3,069,629	-		SO2934	0.23	+0.1
3,069,720	-		SO2934	0.26	-1.1
3,069,792	+		SO2934	0.29	-1.3
3,069,794	+		SO2934	0.29	+0.5
3,069,802	-		SO2934	0.30	-2.0
3,069,839	+		SO2934	0.31	-0.7
3,069,839	+		SO2934	0.31	+1.4
3,069,856	+		SO2934	0.32	-1.2
3,069,857	-		SO2934	0.32	-1.5
3,069,857	-		SO2934	0.32	+1.1
3,069,861	+		SO2934	0.32	+1.3
3,069,869	-		SO2934	0.32	-1.5
3,069,871	+		SO2934	0.32	+0.5
3,069,876	+		SO2934	0.33	+1.1
3,069,876	+		SO2934	0.33	-0.5