Strain Fitness in Shewanella oneidensis MR-1 around SO2788

Experiment: C.elegans, mixed culture-2

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	C.elegans, mixed culture-2
2,909,497	+		SO_2786	0.15	+0.5
2,909,519	+		SO_2786	0.26	+0.4
2,909,550	-		SO_2786	0.40	-0.1
2,909,596	+		SO_2786	0.62	+0.3
2,910,360	-				+0.0
2,910,531	-	rrmA	SO2788	0.20	-1.8
2,910,923	+	rrmA	SO2788	0.68	-1.1
2,910,941	-	rrmA	SO2788	0.70	-0.1
2,910,970	-	rrmA	SO2788	0.74	-1.6
2,911,151	-				+1.2
2,911,283	-				-0.1
2,911,302	-		SO2789	0.11	+0.8
2,911,344	-		SO2789	0.16	+0.9
2,911,349	-		SO2789	0.16	-0.9
2,911,565	+		SO2789	0.43	+2.1
2,911,565	+		SO2789	0.43	+0.9
2,911,584	-		SO2789	0.46	-0.4
2,911,764	+		SO2789	0.68	+1.4
2,911,831	+		SO2789	0.76	+1.1
2,911,874	-		SO2789	0.82	+1.3
2,911,990	-				-0.6
2,912,152	-				+0.3