Strain Fitness in Shewanella oneidensis MR-1 around SO2685

Experiment: C.elegans, mixed culture-2

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	C.elegans, mixed culture-2
2,806,674	-				-2.0
2,806,674	-				+0.4
2,806,674	-				+1.3
2,806,683	+				-1.1
2,806,691	-				-0.6
2,806,691	-				+1.5
2,806,691	-				-0.9
2,806,691	-				+1.1
2,806,753	-				+0.8
2,806,796	-		SO2684	0.11	+0.0
2,806,806	+		SO2684	0.12	+1.5
2,806,821	+		SO2684	0.13	+0.6
2,806,829	-		SO2684	0.14	+0.8
2,806,829	-		SO2684	0.14	-0.0
2,806,925	+		SO2684	0.24	+0.7
2,807,084	+		SO2684	0.41	-1.6
2,807,084	+		SO2684	0.41	-0.6
2,807,089	+		SO2684	0.41	+2.0
2,807,097	-		SO2684	0.42	+0.3
2,807,209	-		SO2684	0.54	-1.7
2,807,214	-		SO2684	0.54	+0.9
2,807,254	+		SO2684	0.58	-0.2
2,807,267	-		SO2684	0.60	+0.6
2,807,317	+		SO2684	0.65	-0.3
2,807,404	-		SO2684	0.74	+0.9
2,807,464	-		SO2684	0.80	-0.0
2,807,483	-		SO2684	0.82	+0.2
2,807,505	-		SO2684	0.85	+1.4
2,807,557	-				+1.1
2,807,670	+				+0.8
2,807,703	+				-0.2
2,807,711	-				+0.6
2,807,857	-		SO2685	0.23	+0.7
2,808,002	-		SO2685	0.39	-0.3
2,808,011	+		SO2685	0.40	-1.2
2,808,011	+		SO2685	0.40	+0.3
2,808,038	-		SO2685	0.43	-1.3
2,808,148	-		SO2685	0.55	-0.4
2,808,168	-		SO2685	0.57	+1.2
2,808,426	+		SO2685	0.86	-0.3
2,808,546	+				-1.4
2,808,546	+				+2.1
2,808,728	+		SO2686	0.48	-0.3
2,808,728	+		SO2686	0.48	-0.1
2,808,728	+		SO2686	0.48	+0.9
2,808,736	-		SO2686	0.51	-1.6
2,808,736	-		SO2686	0.51	+0.3
2,808,771	+		SO2686	0.65	+1.1
2,808,779	-		SO2686	0.68	+0.2
2,808,779	-		SO2686	0.68	-0.9
2,808,831	+		SO2686	0.89	+1.3
2,808,851	+				-0.2
2,808,990	+		SO2687	0.23	+0.0
2,809,197	+		SO2687	0.60	+1.1
2,809,197	+		SO2687	0.60	-1.0
2,809,210	+		SO2687	0.62	+0.0
2,809,299	-		SO2687	0.78	+0.3
2,809,475	+				+0.9