Strain Fitness in Shewanella oneidensis MR-1 around SO2581

Experiment: C.elegans, mixed culture-2

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	C.elegans, mixed culture-2
2,706,980	-	rnd	SO2580	0.25	+0.6
2,707,060	-	rnd	SO2580	0.32	+0.4
2,707,105	+	rnd	SO2580	0.36	+0.1
2,707,113	-	rnd	SO2580	0.37	+0.4
2,707,152	-	rnd	SO2580	0.40	-1.8
2,707,158	+	rnd	SO2580	0.41	+0.5
2,707,441	+	rnd	SO2580	0.67	+0.1
2,707,462	+	rnd	SO2580	0.68	+2.6
2,707,470	-	rnd	SO2580	0.69	+0.7
2,707,470	-	rnd	SO2580	0.69	+0.3
2,707,934	-				+0.4
2,707,951	+				-0.7
2,708,357	-	fadD-1	SO2581	0.28	-0.1
2,708,468	+	fadD-1	SO2581	0.35	+0.8
2,708,715	-	fadD-1	SO2581	0.50	-0.6
2,708,715	-	fadD-1	SO2581	0.50	-1.5
2,708,824	+	fadD-1	SO2581	0.56	-0.7
2,708,868	+	fadD-1	SO2581	0.59	+0.3
2,708,876	-	fadD-1	SO2581	0.59	-0.9
2,709,065	+	fadD-1	SO2581	0.70	-0.1
2,709,151	+	fadD-1	SO2581	0.76	+0.1
2,709,249	+	fadD-1	SO2581	0.81	-0.0
2,709,250	+	fadD-1	SO2581	0.81	+2.1
2,709,294	+	fadD-1	SO2581	0.84	-1.1
2,709,302	-	fadD-1	SO2581	0.85	+0.1
2,709,339	+	fadD-1	SO2581	0.87	-2.2
2,709,431	-				-0.2
2,709,461	-				-1.8
2,709,497	-				+0.1
2,709,606	-				-1.0
2,709,656	-				+0.3
2,709,866	+		SO2582	0.13	-1.3
2,709,874	-		SO2582	0.13	-1.6
2,709,874	-		SO2582	0.13	-1.0
2,709,874	-		SO2582	0.13	+0.1
2,709,960	+		SO2582	0.23	-0.9
2,709,967	+		SO2582	0.24	+0.8
2,709,968	-		SO2582	0.24	-1.1
2,709,968	-		SO2582	0.24	+0.5
2,710,107	-		SO2582	0.40	+3.5
2,710,138	-		SO2582	0.44	-2.4
2,710,138	-		SO2582	0.44	-0.5
2,710,214	+		SO2582	0.53	-1.3
2,710,236	-		SO2582	0.55	+0.6