Strain Fitness in Shewanella oneidensis MR-1 around SO2539

Experiment: C.elegans, mixed culture-2

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	C.elegans, mixed culture-2
2,668,429	+		SO2538	0.11	-0.7
2,668,429	-		SO2538	0.11	-1.9
2,668,429	-		SO2538	0.11	-0.3
2,668,429	-		SO2538	0.11	+0.5
2,668,444	-		SO2538	0.13	-2.6
2,668,447	+		SO2538	0.13	+1.0
2,668,449	-		SO2538	0.13	+0.4
2,668,457	+		SO2538	0.14	-0.1
2,668,565	+		SO2538	0.23	-0.8
2,668,624	-		SO2538	0.29	-1.8
2,668,631	+		SO2538	0.29	+1.0
2,668,719	+		SO2538	0.37	-1.9
2,668,727	-		SO2538	0.38	+0.8
2,668,762	+		SO2538	0.41	+1.6
2,668,793	+		SO2538	0.44	+0.4
2,668,799	+		SO2538	0.44	-1.1
2,668,801	-		SO2538	0.45	+0.0
2,668,801	-		SO2538	0.45	+1.2
2,668,807	-		SO2538	0.45	+0.6
2,669,069	+		SO2538	0.69	-0.7
2,669,077	-		SO2538	0.69	-0.0
2,669,127	+		SO2538	0.74	+1.4
2,669,221	+		SO2538	0.82	+0.9
2,669,330	-				+0.2
2,669,330	-				-0.3
2,669,370	+				-0.7
2,669,528	+				+1.2
2,669,528	+				-1.7
2,669,536	-				-0.4
2,669,602	+				+0.9
2,669,714	+		SO2539	0.15	-2.0
2,669,723	+		SO2539	0.15	-0.8
2,669,723	+		SO2539	0.15	-1.2
2,669,732	-		SO2539	0.15	-1.1
2,669,756	+		SO2539	0.17	-1.2
2,669,793	-		SO2539	0.19	+0.3
2,669,862	+		SO2539	0.22	+0.4
2,669,909	+		SO2539	0.24	-1.9
2,670,004	+		SO2539	0.29	-2.4
2,670,106	-		SO2539	0.34	+0.4
2,670,106	-		SO2539	0.34	-0.5
2,670,106	-		SO2539	0.34	-1.9
2,670,164	+		SO2539	0.37	+1.0
2,670,181	-		SO2539	0.38	+1.0
2,670,265	-		SO2539	0.42	-0.4
2,670,270	-		SO2539	0.43	+0.6
2,670,277	-		SO2539	0.43	+0.1
2,670,305	+		SO2539	0.44	+0.2
2,670,346	+		SO2539	0.47	-2.0
2,670,354	-		SO2539	0.47	-1.7
2,670,360	+		SO2539	0.47	-1.7
2,670,368	-		SO2539	0.48	-0.5
2,670,389	+		SO2539	0.49	-0.7
2,670,570	-		SO2539	0.58	+0.5
2,670,861	-		SO2539	0.73	-0.5
2,670,861	-		SO2539	0.73	+0.9
2,670,881	-		SO2539	0.74	+1.4
2,671,042	+		SO2539	0.82	+0.3
2,671,193	-		SO2539	0.89	+0.0
2,671,218	+				-0.1
2,671,276	+				+0.6
2,671,282	+				-1.2
2,671,284	-				+0.1
2,671,309	-				+0.6
2,671,311	+				-1.2
2,671,311	+				+1.7
2,671,320	-				-0.2
2,671,354	-				+1.3
2,671,399	-				+2.4
2,671,435	+				+1.4
2,671,435	+				-0.3
2,671,443	-				+0.2
2,671,460	+				+2.5
2,671,522	-		SO2540	0.19	+0.1
2,671,584	+		SO2540	0.30	+2.6
2,671,584	+		SO2540	0.30	-0.5
2,671,584	+		SO2540	0.30	+0.3
2,671,592	-		SO2540	0.31	-2.0
2,671,631	-		SO2540	0.38	-0.2
2,671,631	-		SO2540	0.38	-0.1
2,671,649	+		SO2540	0.41	+0.8
2,671,722	+		SO2540	0.54	+1.6
2,671,910	+		SO2540	0.86	+0.2
2,671,934	-				+0.8
2,671,949	+				+0.8
2,672,083	+				+3.4
2,672,095	-				+0.1
2,672,148	-				-2.0
2,672,178	+				-0.9
2,672,208	+				+0.2
2,672,215	+		SO2541	0.10	+2.2
2,672,239	+		SO2541	0.12	+0.2
2,672,350	+		SO2541	0.20	-0.9