Strain Fitness in Shewanella oneidensis MR-1 around SO2491

Experiment: C.elegans, mixed culture-2

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	C.elegans, mixed culture-2
2,612,976	-				+1.6
2,613,043	+		SO2490	0.17	-0.7
2,613,276	+		SO2490	0.44	+0.6
2,613,298	+		SO2490	0.47	+0.9
2,613,632	+		SO2490	0.86	+2.2
2,613,653	+		SO2490	0.89	+0.6
2,613,903	-				+0.0
2,614,373	-	pykA	SO2491	0.30	-1.7
2,614,403	+	pykA	SO2491	0.32	+2.6
2,614,563	-	pykA	SO2491	0.44	+2.6
2,615,189	-	pykA	SO2491	0.87	+1.0
2,615,309	+				-1.6
2,615,944	-				-0.8
2,615,991	-				+0.4
2,616,037	-		SO2492	0.12	+0.2
2,616,041	+		SO2492	0.12	+1.1
2,616,063	-		SO2492	0.13	-1.0
2,616,310	-		SO2492	0.24	+0.2
2,616,316	-		SO2492	0.24	+1.8