Strain Fitness in Shewanella oneidensis MR-1 around SO2443
Experiment: C.elegans, mixed culture-2
Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.
Per-strain Table
Position | Strand | Gene | LocusTag | Fraction | C.elegans, mixed culture-2 |
---|---|---|---|---|---|
remove | |||||
2,555,122 | + | +1.6 | |||
2,555,122 | + | +0.6 | |||
2,555,147 | + | +0.3 | |||
2,555,156 | - | -0.6 | |||
2,555,243 | + | thiG | SO2441 | 0.20 | +0.4 |
2,555,243 | + | thiG | SO2441 | 0.20 | +0.8 |
2,555,251 | - | thiG | SO2441 | 0.21 | +0.0 |
2,555,410 | + | thiG | SO2441 | 0.42 | +0.8 |
2,555,433 | - | thiG | SO2441 | 0.45 | +0.7 |
2,555,489 | - | thiG | SO2441 | 0.52 | +0.7 |
2,555,522 | - | thiG | SO2441 | 0.56 | +1.2 |
2,555,563 | + | thiG | SO2441 | 0.62 | +0.9 |
2,555,580 | + | thiG | SO2441 | 0.64 | +0.8 |
2,555,855 | + | -0.7 | |||
2,555,919 | - | thiS | SO2442 | 0.30 | +0.7 |
2,556,483 | + | thiF | SO2443 | 0.47 | -0.1 |
2,556,680 | + | thiF | SO2443 | 0.69 | +0.5 |
2,556,680 | + | thiF | SO2443 | 0.69 | -1.7 |
2,556,680 | + | thiF | SO2443 | 0.69 | -0.7 |
2,556,738 | + | thiF | SO2443 | 0.75 | -0.4 |
2,556,738 | + | thiF | SO2443 | 0.75 | +0.2 |
2,556,918 | - | +1.8 | |||
2,556,971 | - | +1.6 | |||
2,557,138 | - | thiDE | SO2444 | 0.11 | -1.3 |
2,557,138 | - | thiDE | SO2444 | 0.11 | +0.1 |
2,557,214 | - | thiDE | SO2444 | 0.16 | +0.3 |
2,557,280 | + | thiDE | SO2444 | 0.20 | +0.2 |
2,557,413 | - | thiDE | SO2444 | 0.29 | +0.5 |
2,557,483 | + | thiDE | SO2444 | 0.33 | -0.0 |
2,557,552 | + | thiDE | SO2444 | 0.38 | -0.1 |
2,557,555 | - | thiDE | SO2444 | 0.38 | +0.9 |
2,557,676 | + | thiDE | SO2444 | 0.45 | -0.2 |
2,557,690 | + | thiDE | SO2444 | 0.46 | -0.0 |
2,557,723 | + | thiDE | SO2444 | 0.48 | -0.0 |
2,557,729 | + | thiDE | SO2444 | 0.49 | -0.7 |
2,557,742 | + | thiDE | SO2444 | 0.50 | +1.1 |
2,557,760 | - | thiDE | SO2444 | 0.51 | +1.4 |
2,557,770 | + | thiDE | SO2444 | 0.51 | -0.3 |
2,557,778 | - | thiDE | SO2444 | 0.52 | -0.3 |
2,557,782 | + | thiDE | SO2444 | 0.52 | -2.0 |
2,557,790 | - | thiDE | SO2444 | 0.53 | -0.3 |
2,557,794 | + | thiDE | SO2444 | 0.53 | +1.0 |
2,557,874 | + | thiDE | SO2444 | 0.58 | -1.1 |
2,557,874 | + | thiDE | SO2444 | 0.58 | +1.7 |
Or see this region's nucleotide sequence