Strain Fitness in Shewanella oneidensis MR-1 around SO2443

Experiment: C.elegans, mixed culture-2

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	C.elegans, mixed culture-2
2,555,122	+				+1.6
2,555,122	+				+0.6
2,555,147	+				+0.3
2,555,156	-				-0.6
2,555,243	+	thiG	SO2441	0.20	+0.4
2,555,243	+	thiG	SO2441	0.20	+0.8
2,555,251	-	thiG	SO2441	0.21	+0.0
2,555,410	+	thiG	SO2441	0.42	+0.8
2,555,433	-	thiG	SO2441	0.45	+0.7
2,555,489	-	thiG	SO2441	0.52	+0.7
2,555,522	-	thiG	SO2441	0.56	+1.2
2,555,563	+	thiG	SO2441	0.62	+0.9
2,555,580	+	thiG	SO2441	0.64	+0.8
2,555,855	+				-0.7
2,555,919	-	thiS	SO2442	0.30	+0.7
2,556,483	+	thiF	SO2443	0.47	-0.1
2,556,680	+	thiF	SO2443	0.69	+0.5
2,556,680	+	thiF	SO2443	0.69	-1.7
2,556,680	+	thiF	SO2443	0.69	-0.7
2,556,738	+	thiF	SO2443	0.75	-0.4
2,556,738	+	thiF	SO2443	0.75	+0.2
2,556,918	-				+1.8
2,556,971	-				+1.6
2,557,138	-	thiDE	SO2444	0.11	-1.3
2,557,138	-	thiDE	SO2444	0.11	+0.1
2,557,214	-	thiDE	SO2444	0.16	+0.3
2,557,280	+	thiDE	SO2444	0.20	+0.2
2,557,413	-	thiDE	SO2444	0.29	+0.5
2,557,483	+	thiDE	SO2444	0.33	-0.0
2,557,552	+	thiDE	SO2444	0.38	-0.1
2,557,555	-	thiDE	SO2444	0.38	+0.9
2,557,676	+	thiDE	SO2444	0.45	-0.2
2,557,690	+	thiDE	SO2444	0.46	-0.0
2,557,723	+	thiDE	SO2444	0.48	-0.0
2,557,729	+	thiDE	SO2444	0.49	-0.7
2,557,742	+	thiDE	SO2444	0.50	+1.1
2,557,760	-	thiDE	SO2444	0.51	+1.4
2,557,770	+	thiDE	SO2444	0.51	-0.3
2,557,778	-	thiDE	SO2444	0.52	-0.3
2,557,782	+	thiDE	SO2444	0.52	-2.0
2,557,790	-	thiDE	SO2444	0.53	-0.3
2,557,794	+	thiDE	SO2444	0.53	+1.0
2,557,874	+	thiDE	SO2444	0.58	-1.1
2,557,874	+	thiDE	SO2444	0.58	+1.7